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PIP-783 genome browser track #8

Merged

leepc12 merged 1 commit into master from PIP-783_genome_browser_track

Oct 25, 2019

Contributor

leepc12 commented Oct 25, 2019

Presigning for cloud URIs (gs://, s3://)

Use a flag --use-presigned-url-gcs and --gcp-private-key [KEY_FILE] to presign GCS URIs.
Use a flag --public-gcs if your GCS bucket is public. Don't need presigning since it's already public.
Use a flag --use-presigned-url-s3 to presign S3 URIs.
Use --tsv-mapping-path-to-url [TSV_FILE] to define mapping of local path prefix to a URL prefix. You may need to have a web server and organized outputs should be (symlinked) on there.

Added USCS genome browser tracks based on presigned/converted URLs

Use --ucsc-genome-db [GENOME] to define genome DB for UCSC track (e.g. hg38)
Use --ucsc-genome-pos chr?:?????-?????? to define initial genome coord for tracks.


          new feature: 1) presigning oforcloud URIs, 2) USCS genome browser tra…

07a4bb6

…cks based on presigned/converted URLs

leepc12 merged commit ead4758 into master

leepc12 deleted the PIP-783_genome_browser_track branch

October 25, 2019 01:02

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