Skip to content
Merged

Ci #14

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
28 commits
Select commit Hold shift + click to select a range
175ca78
take savefig from example to setup block
progtw Oct 23, 2021
a6d8ed8
replace \code{...} in R docu
progtw Oct 23, 2021
b9d535c
replacing constant$key from R files
progtw Oct 23, 2021
d1f8194
implement global ratiation tests and help
progtw Oct 23, 2021
48cfcfb
reformatting evapotranspiration.jl
progtw Oct 23, 2021
e1de84a
return NamedTuple instead of SLVector
progtw Oct 24, 2021
a8b9982
implement DataFrame variants of potential_ET
progtw Oct 25, 2021
b85c328
modify handling of G and S defaults
progtw Oct 26, 2021
970a375
test and docu equilibrium_imposed_ET
bgctw Oct 26, 2021
c0cfa0f
revert to old syntax of adding broadcasted columns
bgctw Oct 26, 2021
446cfe2
add tests for potential radiation
bgctw Oct 26, 2021
7fb133c
Merge branch 'main' into ci
bgctw Oct 26, 2021
7c1768f
remove suppress_err in setup block
bgctw Oct 26, 2021
41a234b
remove suppress_err in example blocks
bgctw Oct 26, 2021
d266685
work on GPPd filter
progtw Oct 26, 2021
2b5eb7c
Merge branch 'main' into ci
progtw Oct 27, 2021
93159e8
implement filter_growing_season
progtw Oct 27, 2021
ddc1a6b
filter_growing_seasonthrow error too few GPP data
bgctw Oct 27, 2021
42f964e
work on filtering methods
bgctw Oct 27, 2021
0fe8b4d
update compat
bgctw Nov 1, 2021
d725052
revert @. with && to .&&
bgctw Nov 1, 2021
7b2f8d5
remove .&& - does not work with julia 1.6
progtw Nov 1, 2021
579fd21
readability of sun-position plot in walkthrough
bgctw Nov 1, 2021
d243758
implement setinvalid_afterprecip!
bgctw Nov 1, 2021
2321dae
remove surface_conductance from first help page
bgctw Nov 1, 2021
012b69f
update README
progtw Nov 1, 2021
4dbce59
remove non-mutating variant of potential_ET
progtw Nov 1, 2021
805656f
add test for setinvalid_qualityflag!
bgctw Nov 2, 2021
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion .github/workflows/CI.yml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,8 @@ jobs:
matrix:
version:
- '1'
- '^1.7.0-0'
#- '^1.6' # currently covered by '1'
- '^1.7.0-0'
os:
- ubuntu-latest
arch:
Expand Down
132 changes: 0 additions & 132 deletions Esat_abs.svg

This file was deleted.

50 changes: 28 additions & 22 deletions Project.toml
Original file line number Diff line number Diff line change
Expand Up @@ -4,35 +4,41 @@ authors = ["Thomas Wutzler <twutz@bgc-jena.mpg.de> and contributors"]
version = "0.2.1-DEV"

[deps]
TimeZones = "f269a46b-ccf7-5d73-abea-4c690281aa53"
Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
Optim = "429524aa-4258-5aef-a3af-852621145aeb"
AstroLib = "c7932e45-9af1-51e7-9da9-f004cd3a462b"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
Infiltrator = "5903a43b-9cc3-4c30-8d17-598619ec4e9b"
LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800"
Missings = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
Optim = "429524aa-4258-5aef-a3af-852621145aeb"
PaddedViews = "5432bcbf-9aad-5242-b902-cca2824c8663"
Pipe = "b98c9c47-44ae-5843-9183-064241ee97a0"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
AstroLib = "c7932e45-9af1-51e7-9da9-f004cd3a462b"

[extras]
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb"
TimeZones = "f269a46b-ccf7-5d73-abea-4c690281aa53"

[compat]
TimeZones = "1"
AstroLib = "0.4.1"
DataFrames = "1.2.2"
FillArrays = "0.12.7"
LabelledArrays = "1.6.5"
Missings = "1.0.2"
Optim = "1.4.1"
PaddedViews = "0.5.10"
Pipe = "1.3"
RecursiveArrayTools = "2.20.0"
StaticArrays = "1.2.13"
StatsBase = "0.33.12"
Suppressor = "0.2"
Optim = "1"
LabelledArrays = "1"
Missings = "1"
StaticArrays = "1"
julia = "1.6, 1.7"
Pipe = "1"
DataFrames = "1"
RecursiveArrayTools = "2"
FillArrays = "0.12"
AstroLib = "0.4"
TimeZones = "1.6.1"
julia = "1.6"

[extras]
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[targets]
test = ["Test"]
6 changes: 3 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -46,8 +46,8 @@ file an [issue](https://github.com/bgctw/Bigleaf.jl/issues) if you need a specif

At the current state we ported
- Meteorological variables
- Evapotranspiration
- Potential radiation
- Unit conversions

Upcoming:
- Computation of potential radiation
- Filtering data

65 changes: 0 additions & 65 deletions doc/Manifest.toml

This file was deleted.

2 changes: 0 additions & 2 deletions doc/Project.toml

This file was deleted.

2 changes: 2 additions & 0 deletions docs/make.jl
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,11 @@ makedocs(;
"Walkthrough" => "walkthrough.md",
hide("metorological_variables.md"),
hide("evapotranspiration.md"),
hide("surface_conductance.md"),
hide("global_radiation.md"),
hide("unit_conversions.md"),
hide("bigleaf_constants.md"),
hide("filter_data.md"),
"Index" => "autodocs.md",
],
)
Expand Down
12 changes: 12 additions & 0 deletions docs/src/filter_data.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
## Filtering data
```@index
Pages = ["filter_data.md",]
```

```@docs
setinvalid_qualityflag!
setinvalid_range!
setinvalid_nongrowingseason!
get_growingseason
setinvalid_afterprecip!
```
5 changes: 5 additions & 0 deletions docs/src/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -28,4 +28,9 @@ Pages = ["global_radiation.md",]
Pages = ["unit_conversions.md","bigleaf_constants.md",]
```

## Filtering data
```@index
Pages = ["filter_data.md",]
```


10 changes: 10 additions & 0 deletions docs/src/surface_conductance.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
## Surface conductance
```@index
Pages = ["surface_conductance.md",]
```

```@docs
decoupling
surface_conductance
aerodynamic_conductance
```
Loading