docs(improve documentation for --genes flag): related to #571

Description of --genes flag is more explicit and mentions input as predicted proteins
Ecogenomics · Apr 10, 2024 · 5b6f1a7 · 5b6f1a7
1 parent bacae42
commit 5b6f1a7
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/gtdbtk/cli.py b/gtdbtk/cli.py
@@ -33,8 +33,8 @@ def __temp_dir(group):
 
 def __genes(group):
     group.add_argument('--genes', action='store_true', default=False,
-                       help='indicates input files contain called genes (skip gene calling).Warning: This flag will also skip '
-                            'the ANI comparison steps (ani_screen and classification).')
+                       help='indicates input files contain predicted proteins as amino acids (skip gene calling).'
+                            'Warning: This flag will skip the ANI comparison steps (ani_screen and classification).')
 
 
 def __genome_dir(group):