Build failure on Linux ARM64 #276
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Hello,
Could you run the command src/generic_viterbi_utest --vv in your hmmer
directory and send us the results, please? I'm at a bit of a loss as to
what could be going on here, as the generic_viterbi module doesn't contain
any ARM-specific code, but hopefully running the utest with verbose turned
on will tell us something useful.
…-Nick
On Wed, Apr 20, 2022 at 9:16 AM Martin Grigorov ***@***.***> wrote:
Hello,
I've just tried to build h3-arm branch (against easel's develop branch)
on openEuler OS 20.03 ARM64:
...
exercise 6 [ generic_viterbi] ... FAILED [command failed]
...
1 of 307 exercises at level <= 2 FAILED.
System information:
ср апр 20 13:06:21 UTC 2022
Linux mgrigorov-arm64 4.19.90-2203.5.0.0143.oe1.aarch64 #1 SMP Wed Mar 30 17:26:54 UTC 2022 aarch64 aarch64 aarch64 GNU/Linux
make[1]: *** [Makefile:41: check] Error 1
make: *** [Makefile:118: check] Error 2
Please let me know if you need any specifics about my system and any test
output files!
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The test does not run: Should I do something more before trying to execute it ? |
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Just a progress update: tested this benchmark on our M1 Mac, and couldn't
reproduce the problem. I'm looking for access to an ARM Unix machine to
test on.
…-Nick
On Wed, Apr 20, 2022 at 1:53 PM Martin Grigorov ***@***.***> wrote:
***@***.*** ~/g/h/h/hmmer (h3-arm)> ./src/generic_viterbi_utest --vv
trace score and Viterbi score don't agree.
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Hi Nick,
Thanks for looking into this issue!
I can provide you with a Linux ARM64 VM!
Please contact me at martin.grigorov at Gmail com and send me your
preferred spec (flavor, CPU, RAM, disk space,...)
…On Mon, Apr 25, 2022, 22:03 Nick Carter ***@***.***> wrote:
Just a progress update: tested this benchmark on our M1 Mac, and couldn't
reproduce the problem. I'm looking for access to an ARM Unix machine to
test on.
-Nick
On Wed, Apr 20, 2022 at 1:53 PM Martin Grigorov ***@***.***>
wrote:
> ***@***.*** ~/g/h/h/hmmer (h3-arm)> ./src/generic_viterbi_utest --vv
> trace score and Viterbi score don't agree.
>
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Hi, I've started from scratch (clone, autoconf, ...) and today I am not able to reproduce the issue with the failing test! Closing... |
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Hello,
I've just tried to build
h3-armbranch (against easel'sdevelopbranch) on openEuler OS 20.03 ARM64:Please let me know if you need any specifics about my system and any test output files!
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