Symlinks failing

[briancheung]

Error output:

---

AttributeError Traceback (most recent call last)
/home/millskl/CPAC_files/FCP-INDI-C-PAC-7b14cf3/ in ()
----> 1 c['node'].run()

/home/millskl/epd-7.3-2-rh3-x86_64/lib/python2.7/site-packages/nipype/pipeline/engine.pyc in run(self, updatehash)
1058 self.config = merge_dict(deepcopy(config._sections), self.config)
1059 if not self._got_inputs:
-> 1060 self._get_inputs()
1061 self._got_inputs = True
1062 outdir = self.output_dir()

/home/millskl/epd-7.3-2-rh3-x86_64/lib/python2.7/site-packages/nipype/pipeline/engine.pyc in _get_inputs(self)
1204 output_name = info[1]
1205 try:
-> 1206 output_value = results.outputs.get()[output_name]
1207 except TypeError:
1208 output_value = results.outputs.dictcopy()[output_name]

AttributeError: 'NoneType' object has no attribute 'get'

If this is being caused by the nipype datasink not being updated with the new changes we need, can you post the link to the fork in an easy to find place?

[ssikka]

it is being caused by that... i am going to post the nipype branch with the
fix on fcp-indi, today. I tried doing it yesterday for a while ... will ask
dan to do it...

On Mon, Sep 3, 2012 at 11:01 AM, Brian Cheung notifications@github.comwrote:

Error output:

AttributeError Traceback (most recent call last)
/home/millskl/CPAC_files/FCP-INDI-C-PAC-7b14cf3/ in ()
----> 1 c['node'].run()

/home/millskl/epd-7.3-2-rh3-x86_64/lib/python2.7/site-packages/nipype/pipeline/engine.pyc
in run(self, updatehash)
1058 self.config = merge_dict(deepcopy(config._sections), self.config)
1059 if not self._got_inputs:
-> 1060 self._get_inputs()
1061 self._got_inputs = True
1062 outdir = self.output_dir()

/home/millskl/epd-7.3-2-rh3-x86_64/lib/python2.7/site-packages/nipype/pipeline/engine.pyc
in _get_inputs(self)
1204 output_name = info[1]
1205 try:
-> 1206 output_value = results.outputs.get()[output_name]
1207 except TypeError:
1208 output_value = results.outputs.dictcopy()[output_name]

AttributeError: 'NoneType' object has no attribute 'get'

If this is being caused by the nipype datasink not being updated with the
new changes we need, can you post the fork easy to find?

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/64.

[ssikka]

i have transferred nipype with my fix to fcp-indi https://github.com/FCP-INDI/nipype ... this should fix it.