Merge branch 'main' into changelog-0.7.0

.github/workflows/ci_docs.yml

@@ -43,7 +43,7 @@ jobs:
     steps:
       # Cancel previous runs that are not completed
       - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.9.1
+        uses: styfle/cancel-workflow-action@0.10.0
         with:
           access_token: ${{ github.token }}
 

.github/workflows/ci_tests.yaml

@@ -63,7 +63,7 @@ jobs:
     steps:
       # Cancel previous runs that are not completed
       - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.9.1
+        uses: styfle/cancel-workflow-action@0.10.0
         with:
           access_token: ${{ github.token }}
 

.github/workflows/ci_tests_dev.yaml

@@ -39,7 +39,7 @@ jobs:
     steps:
       # Cancel previous runs that are not completed
       - name: Cancel Previous Runs
-        uses: styfle/cancel-workflow-action@0.9.1
+        uses: styfle/cancel-workflow-action@0.10.0
         with:
           access_token: ${{ github.token }}
 

pygmt/helpers/__init__.py

@@ -2,7 +2,6 @@
 Functions, classes, decorators, and context managers to help wrap GMT modules.
 """
 from pygmt.helpers.decorators import (
-    check_data_input_order,
     deprecate_parameter,
     fmt_docstring,
     kwargs_to_strings,

pygmt/helpers/decorators.py

@@ -806,71 +806,3 @@ def new_module(*args, **kwargs):
         return new_module
 
     return deprecator
-
-
-def check_data_input_order(deprecate_version, remove_version):
-    """
-    Decorator to raise a FutureWarning if the order of data input parameters
-    changes and positional arguments are passed.
-
-    The decorator is temporary and should be removed in v0.7.0.
-
-    Parameters
-    ----------
-    deprecate_version : str
-        The PyGMT version when the order of data input parameters is changed.
-    remove_version : str
-        The PyGMT version when the deprecation warning should be removed.
-
-    Examples
-    --------
-    >>> @check_data_input_order("v0.0.0", "v9.9.9")
-    ... def module(data=None, x=None, y=None, z=None, **kwargs):
-    ...     "A module that prints the arguments it received"
-    ...     print(f"data={data}, x={x}, y={y}, z={z}")
-    >>> module(data="table.txt")
-    data=table.txt, x=None, y=None, z=None
-    >>> module(x=0, y=1, z=2)
-    data=None, x=0, y=1, z=2
-    >>> with warnings.catch_warnings(record=True) as w:
-    ...     module(0, 1, 2)
-    ...     assert len(w) == 1
-    ...     assert issubclass(w[0].category, FutureWarning)
-    ...
-    data=0, x=1, y=2, z=None
-    """
-
-    def data_input_order_checker(module_func):
-        """
-        The decorator that creates the new function to check if positional
-        arguments are passed.
-        """
-
-        @functools.wraps(module_func)
-        def new_module(*args, **kwargs):
-            """
-            New module instance that raises a warning if positional arguments
-            are passed.
-            """
-            # Plotting functions always have a "self" parameter
-            # which is a pygmt.Figure instance that has a "savefig" method
-            if len(args) > 1 and hasattr(args[0], "savefig"):
-                plotting_func = 1
-            else:
-                plotting_func = 0
-
-            if len(args) > 1 + plotting_func:
-                # more than one positional arguments are used
-                msg = (
-                    "The function parameters has been re-ordered as 'data, x, y, [z]' "
-                    f"since {deprecate_version} but you're passing positional arguments. "
-                    "You can silence the warning by passing keyword arguments "
-                    "like 'x=x, y=y, z=z'. Otherwise, the warning will be removed "
-                    f"in {remove_version}."
-                )
-                warnings.warn(msg, category=FutureWarning, stacklevel=2)
-            return module_func(*args, **kwargs)
-
-        return new_module
-
-    return data_input_order_checker

pygmt/src/blockm.py

@@ -6,7 +6,6 @@
 from pygmt.helpers import (
     GMTTempFile,
     build_arg_string,
-    check_data_input_order,
     fmt_docstring,
     kwargs_to_strings,
     use_alias,
@@ -70,7 +69,6 @@ def _blockm(block_method, data, x, y, z, outfile, **kwargs):
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     I="spacing",
     R="region",
@@ -168,7 +166,6 @@ def blockmean(data=None, x=None, y=None, z=None, outfile=None, **kwargs):
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     I="spacing",
     R="region",
@@ -256,7 +253,6 @@ def blockmedian(data=None, x=None, y=None, z=None, outfile=None, **kwargs):
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     I="spacing",
     R="region",

pygmt/src/contour.py

@@ -3,17 +3,10 @@
 """
 
 from pygmt.clib import Session
-from pygmt.helpers import (
-    build_arg_string,
-    check_data_input_order,
-    fmt_docstring,
-    kwargs_to_strings,
-    use_alias,
-)
+from pygmt.helpers import build_arg_string, fmt_docstring, kwargs_to_strings, use_alias
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     A="annotation",
     B="frame",

pygmt/src/plot.py

@@ -5,7 +5,6 @@
 from pygmt.exceptions import GMTInvalidInput
 from pygmt.helpers import (
     build_arg_string,
-    check_data_input_order,
     data_kind,
     fmt_docstring,
     is_nonstr_iter,
@@ -16,7 +15,6 @@
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     A="straight_line",
     B="frame",

pygmt/src/plot3d.py

@@ -5,7 +5,6 @@
 from pygmt.exceptions import GMTInvalidInput
 from pygmt.helpers import (
     build_arg_string,
-    check_data_input_order,
     data_kind,
     fmt_docstring,
     is_nonstr_iter,
@@ -16,7 +15,6 @@
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     A="straight_line",
     B="frame",

pygmt/src/rose.py

@@ -3,17 +3,10 @@
 """
 
 from pygmt.clib import Session
-from pygmt.helpers import (
-    build_arg_string,
-    check_data_input_order,
-    fmt_docstring,
-    kwargs_to_strings,
-    use_alias,
-)
+from pygmt.helpers import build_arg_string, fmt_docstring, kwargs_to_strings, use_alias
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     A="sector",
     B="frame",

pygmt/src/surface.py

@@ -6,7 +6,6 @@
 from pygmt.helpers import (
     GMTTempFile,
     build_arg_string,
-    check_data_input_order,
     fmt_docstring,
     kwargs_to_strings,
     use_alias,
@@ -17,7 +16,6 @@
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     I="spacing",
     R="region",

pygmt/src/wiggle.py

@@ -2,17 +2,10 @@
 wiggle - Plot z=f(x,y) anomalies along tracks.
 """
 from pygmt.clib import Session
-from pygmt.helpers import (
-    build_arg_string,
-    check_data_input_order,
-    fmt_docstring,
-    kwargs_to_strings,
-    use_alias,
-)
+from pygmt.helpers import build_arg_string, fmt_docstring, kwargs_to_strings, use_alias
 
 
 @fmt_docstring
-@check_data_input_order("v0.5.0", remove_version="v0.7.0")
 @use_alias(
     B="frame",
     D="position",

pygmt/tests/test_filter1d.py

@@ -8,21 +8,17 @@
 import pandas as pd
 import pytest
 from pygmt import filter1d
+from pygmt.datasets import load_sample_data
 from pygmt.exceptions import GMTInvalidInput
 from pygmt.helpers import GMTTempFile
-from pygmt.src import which
 
 
 @pytest.fixture(scope="module", name="data")
 def fixture_table():
     """
-    Load the grid data from the sample earth_relief file.
+    Load the @MaunaLoa_CO2.txt dataset as a pandas dataframe.
     """
-    fname = which("@MaunaLoa_CO2.txt", download="c")
-    data = pd.read_csv(
-        fname, header=None, skiprows=1, sep=r"\s+", names=["date", "co2_ppm"]
-    )
-    return data
+    return load_sample_data(name="maunaloa_co2")
 
 
 def test_filter1d_no_outfile(data):