0.4.0-dev3

What's Changed

• build: pin ruff to v0.2.0 by @korikuzma in #272
• feat: Determine adjacent exon for fusions with non-exonic breakpoint by @jarbesfeld in #268

New Contributors

• @jarbesfeld made their first contribution in #268

Full Changelog: 0.4.0-dev2...0.4.0-dev3

0.4.0-dev2

What's Changed

• fix: StrEnum to Enum for python < 3.11 by @korikuzma in #258
• docs: add generated changelog by @jsstevenson in #259
• style: add additional ruff checks by @jsstevenson in #260
• docs: fix readme links to docs by @jsstevenson in #262
• build: replace pyliftover with agct to improve performance by @korikuzma in #264
• fix: package version by @korikuzma in #265

Full Changelog: 0.4.0-dev1...0.4.0-dev2

0.4.0-dev1

What's Changed

• fix: include package data by @korikuzma in #257

Full Changelog: 0.4.0-dev0...0.4.0-dev1

0.4.0-dev0

What's Changed

• feat!: use latest UTA schema as default by @jsstevenson in #223
• feat!: include cdna and protein represenation when starting from genomic layer by @korikuzma in #228
• docs: add documentation by @jsstevenson in #222
• docs: add documentation links by @jsstevenson in #233
• build: remove pipenv support by @jsstevenson in #236
• build: use pyproject.toml for build config by @jsstevenson in #234
• test: make doctests work by @jsstevenson in #240
• fix!: return inter-residue positions instead of zero-based positions by @korikuzma in #235
• chore: rm pipfile lock references in .gitignore by @korikuzma in #238
• fix: polars InvalidOperationError by @korikuzma in #241
• style: use ruff for formatting by @jsstevenson in #242
• refactor: use enum for strand by @korikuzma in #244
• tests: resolve warnings by @korikuzma in #247
• refactor!: fix class naming by @korikuzma in #249
• refactor!: initial work for cleaning up ExonGenomicCoordsMapper by @korikuzma in #252
• chore: remove todo's in tests by @korikuzma in #251

Full Changelog: 0.3.0-dev1...0.4.0-dev0

0.1.14-dev3

• fix: return type for FeatureOverlap get_grch38_mane_gene_cds_overlap by @korikuzma in 67a241c

Full Changelog: 0.1.14-dev2...0.1.14-dev3

0.1.14-dev2

What's Changed

• feat: get cds overlap given chromosome, start, + stop by @korikuzma in #217

Full Changelog: v0.1.14-dev1...0.1.14-dev2

0.3.0-dev1

What's Changed

• build: properly pin pydantic v2 major version by @korikuzma in #215

Full Changelog: 0.3.0-dev0...0.3.0-dev1

0.3.0-dev0

What's Changed

• cicd: update release.yaml (publish python distribution to pypi) by @korikuzma in #197
• refactor!: rearrange app architecture by @korikuzma in #196
• refactor: use ResidueMode for residue_mode type by @korikuzma in #199
• style: use ruff + black by @korikuzma in #200
• refactor: use AnnotationLayer enum by @korikuzma in #203
• build: replace pandas with polars (#178) by @korikuzma in #205
• refactor!: Update TranscriptPriority enum by @korikuzma in #201
• feat: make positions optional in get_transcripts_from_gene by @katiestahl in #210
• refactor!: get_gene_mane_data sorted by desc MANE_Status by @korikuzma in #213
• build: pin pydantic to v2 major version by @korikuzma in #214
• feat!: create method for GRCh38 to MANE protein representation by @korikuzma in #211

New Contributors

• @katiestahl made their first contribution in #210

Full Changelog: 0.2.0-dev0...0.3.0-dev0

0.2.0-dev0

What's Changed

• build: update pydantic to v2 and remove GeneNormalizer class by @korikuzma in #189

Full Changelog: v0.1.14-dev1...0.2.0-dev0

v0.1.14-dev1

What's Changed

• build: use standard lib urlparse by @jsstevenson in #181
• chore: clean up some type annotations by @jsstevenson in #183
• fix: update FASTA header format by @jsstevenson in #182

Full Changelog: v0.1.14-dev0...v0.1.14-dev1