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Merged
merged 9 commits into from
Jul 21, 2025
Merged

Feat/doc #191

merged 9 commits into from
Jul 21, 2025

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taoshengshi
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@taoshengshi taoshengshi commented Jul 21, 2025

PR Type

INSERT_PR_TYPE

PR Checklist

  • Tests for the changes have been added / updated.
  • Documentation comments have been added / updated.
  • A changelog entry has been made for the appropriate packages.
  • Format code with the nightly rustfmt (cargo +nightly fmt).

Overview

Summary by CodeRabbit

  • Documentation
    • Improved formatting and clarified references in the README.
    • Added a new document providing an overview of DataLad, its features, and its role in scientific data management.

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coderabbitai bot commented Jul 21, 2025

Walkthrough

The pull request updates the README.md to improve formatting, clarify references, and enhance image presentation. Additionally, it introduces a new documentation file, docs/jzfs.md, which provides an in-depth overview of DataLad, its foundational technologies, and its significance in scientific data management and reproducibility.

Changes

File(s) Change Summary
README.md Improved formatting, clarified attribution, refined image embedding, and updated descriptive text.
docs/jzfs.md Added a new document detailing DataLad's purpose, architecture, and advantages in data management.

Estimated code review effort

1 (less than 30 minutes)

Poem

A README polished, clear and bright,
With DataLad’s tale brought to light.
Docs now bloom where once was none,
Explaining science, how it’s done.
With paws on keys, I hop with glee—
These changes spark productivity!
🐇✨


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Actionable comments posted: 0

🧹 Nitpick comments (7)
README.md (2)

60-62: Inline HTML is brittle & uses non-standard attributes – switch to Markdown syntax

<p align="center" width="100%"> and the style="align: center" on the <img> element are not valid HTML attributes and may be ignored by many renderers.
Consider the simpler, portable Markdown form:

-<p align="center" width="100%">
-    <img style="align: center" alt="joint management of code,data,model,..." src="./docs/jzfs-joint-management.png" width="400" />
-</p>
+<p align="center">
+  <img alt="Joint management of code, data, and models" src="./docs/jzfs-joint-management.png" width="400"/>
+</p>

Or, if centre-alignment is not critical, use pure Markdown:

<p align="center">
  <img alt="Joint management of code, data, and models" src="./docs/jzfs-joint-management.png" width="400"/>
</p>

This avoids invalid attributes and keeps the README rendering consistently on GitHub, npm, PyPI, etc.


97-97: Grammar polish

Rewrite for clarity:

-Project planning and experimental details are recorded in an in-house relational cloud-based database of GitData.AI.
+Project planning and experimental details are recorded in GitData.AI’s in-house, cloud-based relational database.
docs/jzfs.md (5)

1-3: Missing document title

Add a level-1 heading so the page has an identifiable title:

+# DataLad: Integrated Management of Code, Data & Provenance
 DataLad is a Python-based tool for the joint management of code, data, and their relationship,

14-15: Wordiness – tighten phrasing

-In order to maximize its utility and target audience, DataLad is available for all major operating systems, and can be integrated into
+To maximize its utility and reach, DataLad is available for all major operating systems and can be integrated into

26-27: Replace colloquial “Last but not least”

-Last but not least, in the absence of standardized data packages, there is no uniform way to declare actionable
+Finally, in the absence of standardized data packages, there is no uniform way to declare actionable

38-44: Footnote marker & spelling issues

  1. The 1 footnote marker is dangling – add a proper reference or remove it.
  2. Consistently spell git-annex with a hyphen.
-Git is the most popular version control system for software development1
-. It is a distributed
+Git is the most popular version control system for software development¹.  
+It is a distributed
@@
-use Git directly for distributed data storage with tailored access to individual files. Gitannex takes advantage of Git’s ability to eff...
+use Git directly for distributed data storage with tailored access to individual files. *git-annex* takes advantage of Git’s ability to eff...

Remember to add the actual footnote definition (e.g., ¹ https://git-scm.com/) at the end of the document if you keep the marker.


60-66: Reduce repetition & improve flow

-research datasets contain millions of files, but a large number of files precludes managing
-such a dataset in a single Git repository, even if the total storage demand is not huge.
+research datasets often contain millions of files, which makes managing them in a single Git repository impractical, even when overall storage is modest.
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 536fbf2 and 93c8301.

⛔ Files ignored due to path filters (3)
  • docs/jzfs-logo-words-light.png is excluded by !**/*.png
  • docs/jzfs-logo-words.png is excluded by !**/*.png
  • docs/jzfs-research-flow.png is excluded by !**/*.png
📒 Files selected for processing (2)
  • README.md (2 hunks)
  • docs/jzfs.md (1 hunks)
🧰 Additional context used
🪛 LanguageTool
docs/jzfs.md

[style] ~14-~14: Consider a more concise word here.
Context: ...urality of existing tools and services. In order to maximize its utility and target audienc...

(IN_ORDER_TO_PREMIUM)


[style] ~26-~26: ‘Last but not least’ might be wordy. Consider a shorter alternative.
Context: ...lete and rarely automatically captured. Last but not least, in the absence of standardized data pa...

(EN_WORDINESS_PREMIUM_LAST_BUT_NOT_LEAST)


[grammar] ~38-~38: Ensure spelling is correct
Context: ...lar version control system for software development1 . It is a distributed content management ...

(QB_NEW_EN_ORTHOGRAPHY_ERROR_IDS_1)


[grammar] ~44-~44: Ensure spelling is correct
Context: ...th tailored access to individual files. Gitannex takes advantage of Git’s ability to eff...

(QB_NEW_EN_ORTHOGRAPHY_ERROR_IDS_1)


[style] ~60-~60: To reduce wordiness, try specifying a number or using “many” or “numerous” instead.
Context: ...datasets contain millions of files, but a large number of files precludes managing such a dataset...

(LARGE_NUMBER_OF)

@taoshengshi taoshengshi merged commit 43dec1d into main Jul 21, 2025
3 checks passed
@taoshengshi taoshengshi deleted the feat/doc branch July 21, 2025 04:07
@coderabbitai coderabbitai bot mentioned this pull request Jul 21, 2025
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