Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Complete conda build with current dependencies #704

Merged
merged 32 commits into from
Aug 16, 2024
Merged

Complete conda build with current dependencies #704

merged 32 commits into from
Aug 16, 2024

Commits on Feb 16, 2024

  1. Recipes for tedana and templateflow, allow mamba debugging to underst… 

    …and fringe cases
    @lalalavi
    lalalavi committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    6a5c860 View commit details
    Browse the repository at this point in the history

  2. Need to explicitly pin version 3.11 or mamba wont use some of the builds

    @lalalavi
    lalalavi committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    179c425 View commit details
    Browse the repository at this point in the history

Commits on Feb 23, 2024

  1. Try accessing oldest pybids from condaforge to avoid building

    @lalalavi
    lalalavi committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    f40c044 View commit details
    Browse the repository at this point in the history

  2. Recipe for niworkflows

    @lalalavi
    lalalavi committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    48a1b27 View commit details
    Browse the repository at this point in the history

  3. Complete migration to conda

    @lalalavi
    lalalavi committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    2ead716 View commit details
    Browse the repository at this point in the history

  4. Fix sqlalchemy being found by conda-forge still

    @lalalavi
    lalalavi committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    57f0bb1 View commit details
    Browse the repository at this point in the history

  5. Add unread nypipe because of .gitignore

    @lalalavi
    lalalavi committed Feb 23, 2024
    Configuration menu
    Copy the full SHA
    7d78809 View commit details
    Browse the repository at this point in the history

Commits on Feb 26, 2024

  1. Fix fmriprep recipe

    @lalalavi
    lalalavi committed Feb 26, 2024
    Configuration menu
    Copy the full SHA
    f3ef879 View commit details
    Browse the repository at this point in the history

Commits on Feb 29, 2024

  1. Remove all pip commands from install-requirements.sh

    @lalalavi
    lalalavi committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    af0d7c3 View commit details
    Browse the repository at this point in the history

Commits on Mar 11, 2024

  1. Add more stringent checks to fmriprep recipe

    @HippocampusGirl
    HippocampusGirl committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    f9016bb View commit details
    Browse the repository at this point in the history

  2. Merge branch 'conda_nii' of github.com:HALFpipe/HALFpipe into conda_nii

    @HippocampusGirl
    HippocampusGirl committed Mar 11, 2024
    Configuration menu
    Copy the full SHA
    a397183 View commit details
    Browse the repository at this point in the history

Commits on Jul 23, 2024

  1. Merge branch 'main' of https://github.com/HALFpipe/HALFpipe into cond… 

    …a_nii
    @lalalavi
    lalalavi committed Jul 23, 2024
    Configuration menu
    Copy the full SHA
    6fb3bd6 View commit details
    Browse the repository at this point in the history

  2. Add --use-local flag during build of custom conda packages

    @lalalavi
    lalalavi committed Jul 23, 2024
    Configuration menu
    Copy the full SHA
    9434c56 View commit details
    Browse the repository at this point in the history

Commits on Jul 31, 2024

  1. Include runtime dependencies for fmriprep, niworkflows and templateflow

    @lalalavi
    lalalavi committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    7d7a836 View commit details
    Browse the repository at this point in the history

  2. runtime dependencies for smriprep

    @lalalavi
    lalalavi committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    a1de0a2 View commit details
    Browse the repository at this point in the history

  3. Omit loop in Dockerfile 

    Co-authored-by: Lea Waller <lea.waller@charite.de>
    @lalalavi @HippocampusGirl
    lalalavi and HippocampusGirl authored Jul 31, 2024
    Configuration menu
    Copy the full SHA
    971df6f View commit details
    Browse the repository at this point in the history

  4. Add reference for nitransforms

    @lalalavi
    lalalavi committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    191f9d6 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'main' of https://github.com/HALFpipe/HALFpipe into cond… 

    …a_nii
    @lalalavi
    lalalavi committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    d3767af View commit details
    Browse the repository at this point in the history

  6. Merge branch 'conda_nii' of https://github.com/HALFpipe/HALFpipe into… 

    … conda_nii
    @lalalavi
    lalalavi committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    8a73845 View commit details
    Browse the repository at this point in the history

  7. Remove specific version of sqlalchemy since we build ourselves

    @lalalavi
    lalalavi committed Jul 31, 2024
    Configuration menu
    Copy the full SHA
    14054dc View commit details
    Browse the repository at this point in the history

Commits on Aug 1, 2024

  1. Include --default-timeout flag across recipes

    @lalalavi
    lalalavi committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    f2ad4cc View commit details
    Browse the repository at this point in the history

  2. Revert to ordered build and add sdcflows runtime dependencies

    @lalalavi
    lalalavi committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    593389a View commit details
    Browse the repository at this point in the history

  3. Nitransforms build breaks because of new version of scipy

    @lalalavi
    lalalavi committed Aug 1, 2024
    Configuration menu
    Copy the full SHA
    71a31c3 View commit details
    Browse the repository at this point in the history

Commits on Aug 5, 2024

  1. Remove imports from new fmriprep, fix tilde in requirements

    @lalalavi
    lalalavi committed Aug 5, 2024
    Configuration menu
    Copy the full SHA
    54029e6 View commit details
    Browse the repository at this point in the history

  2. Forgot module version

    @lalalavi
    lalalavi committed Aug 5, 2024
    Configuration menu
    Copy the full SHA
    5479d29 View commit details
    Browse the repository at this point in the history

  3. Pin nilearn because _safe_get_data got renamed to safe_get_data in 0.… 

    …10.4
    @lalalavi
    lalalavi committed Aug 5, 2024
    Configuration menu
    Copy the full SHA
    fc4f2e5 View commit details
    Browse the repository at this point in the history

  4. Fix

    @lalalavi
    lalalavi committed Aug 5, 2024
    Configuration menu
    Copy the full SHA
    126eb80 View commit details
    Browse the repository at this point in the history

Commits on Aug 7, 2024

  1. Remove all LICENSE.txt files from recipes

    @lalalavi
    lalalavi committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    4af3675 View commit details
    Browse the repository at this point in the history

  2. remove reference to license file from about section of .yaml files

    @lalalavi
    lalalavi committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    d8ed8c1 View commit details
    Browse the repository at this point in the history

  3. Substitute recipe-level build_config file for a file shared across al… 

    …l recipes
    @lalalavi
    lalalavi committed Aug 7, 2024
    Configuration menu
    Copy the full SHA
    dc390b7 View commit details
    Browse the repository at this point in the history

Commits on Aug 8, 2024

  1. Forgot to edit Dockerfile

    @lalalavi
    lalalavi committed Aug 8, 2024
    Configuration menu
    Copy the full SHA
    4efec92 View commit details
    Browse the repository at this point in the history

Commits on Aug 12, 2024

  1. Merge branch 'main' into conda_nii

    @HippocampusGirl
    HippocampusGirl authored Aug 12, 2024
    Configuration menu
    Copy the full SHA
    8951cb1 View commit details
    Browse the repository at this point in the history