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small glitch in man: ffs() instead of train() #5

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tobwen opened this issue Dec 15, 2019 · 1 comment
Closed

small glitch in man: ffs() instead of train() #5

tobwen opened this issue Dec 15, 2019 · 1 comment

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@tobwen
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tobwen commented Dec 15, 2019 •
edited
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There's a glitch in

CAST/R/ffs.R

Lines 102 to 103 in 7742933

#' model <- ffs(trainDat[,predictors],trainDat$VW,method="rf",
#' tuneLength=1, trControl=ctrl)

which generates

CAST/man/ffs.Rd

Lines 125 to 126 in 7742933

model <- ffs(trainDat[,predictors],trainDat$VW,method="rf",
tuneLength=1, trControl=ctrl)

I think you want train() instead of ffs() here.
@tobwen tobwen changed the title small glitch in man: ffs instead of train small glitch in man: ffs() instead of train() Dec 15, 2019
@HannaMeyer
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Thanks, you're right.

HannaMeyer pushed a commit that referenced this issue Feb 7, 2024
@fab-scm
Prepare branch for PR (#16)
f4fd2bd 
* implement quantitative density layer

* document parameter k

* comments

* just spaces to be in sync with qmd scripts

* change QD to LPD

* update validation and maxLPD derivation

* update plot and print (#2)

* add exploreAOA function (#3)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* Dev (#4)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Dev (#12)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* Dev (#13)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* masking order

* adapt default degrees of freedom

* add exp and scam exp errormodels

* update docs

* update docs

* Dev (#14)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* masking order

* adapt default degrees of freedom

* add exp and scam exp errormodels

* update docs

* update docs

* Dev (#15)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* Change `maxLPD` parameter handling & enable `trainLPD` calculation with only training data provided (no model) (#7)

* add to maxLPD percantages

* update maxLPD parameter validation

* enable trainLPD calc with only trainDat (no model)

* minor change in maxLPD setting

* Add `LPDtoErrormetric` functionality (#8)

* add LPDtoErrormetric and adjust plot functions

* small change

* minor changes on docs and comments

* major docs update

* update DItoErrormetric and LPDtoErrormetric

* New calculation methods for LPD of training data and LPD of prediction data, add DI_LPDtoErrormetric  (#9)

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* Feat train di new (#11)

* Dev (#6)

* update plot and print

* add exploreAOA to package

* add message for trainLPD calculation

* update explore AOA docs

* shift package to description

* update exploreAOA docs

* update exploreAOA docs and add xmark

* update aoa, trainDI and exploreAOA docs

* update aoa docs

* change order of print.aoa

* update aoa.Rd

* update DESCRIPTION

* update aoa & trainDI

* add trainDat upload options

* raster to terra and new layout (#5)

* update plot function

* update exploreAOA

* update exploreAOA

* fix error

* fix error

* fix crs bounding box issue

* rm commented code

* update plot.aoa & exploreAOA

* fix error in trainLPD calculation

* fix MD calculation

* fix order in print.aoa & message in aoa()

* add predictors tif to CAST package

* add countryboundaries

* add elevation

* update trainLPD implementation in trainDI

* add DI_LPDtoErrormetric

* update docs

* update `toErrormetric` functions

* update `...toErrormetric` functions

* update CAST docs

* change legend position in exploreAOA

* update aoa and .knndist - enhance performance of LPD calculation

* update trainDI - add progress bars and messages

* update DI_LPDtoErrormetric & LPDtoErrormetric to enable multiCV

* fix error in LPDtoErrormetric

* masking order

* adapt default degrees of freedom

* add exp and scam exp errormodels

* update docs

* update docs
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@tobwen @HannaMeyer