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macOS 10.12 and Xcode 8.0 broken formulae #1957

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DomT4 opened this issue Jun 14, 2016 · 124 comments

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commented Jun 14, 2016

Please don't try to use Xcode 7 on 10.12. Compiling almost anything will fail in fun ways. Install the Xcode 8 beta or the 8.x CLT package & ensure you've pointed sudo xcode-select --switch at either one.

Like Christmas, once a year a new operating system for Macs swings around... and like Christmas a bunch of toys get broken accidentally. This year's broken toys include:

Broken:

Upstream/Homebrew 10.12 support hacks:

Resolved:

Just so people are aware: Comments highlighting issues that turn out not to be actual formulae issues, i.e. user configuration problems, will be chopped after a couple of days to keep this thread from getting drowned.

@MikeMcQuaid

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commented Jun 14, 2016

I'd like to suggest we actively disable Qt on 10.12. There will be no way in hell upstream will officially support it and we're in the process of trying to kill it anyway.

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commented Jun 14, 2016

Agreed. That does effectively set a hard deadline on migrating across as much stuff to qt5 as we can before GM. It's not a difficult timetable, but will require a fair bit of work.

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commented Jun 14, 2016

@DomT4 I have xcode7 installed I also have xcode-beta (xcode8) installed

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commented Jun 14, 2016

@jeregrine You probably need to sudo xcode-select --switch over to the beta Xcode & ensure the CLT (If you have them installed) are the 8.0 version. Xcode 7 will break almost everything on 10.12, pretty much.

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commented Jun 15, 2016

since this appears to be a general issue thread, i'll just add to it:

GHC fails to build, erroring with this:

Last 15 lines from /Users/zhiayang/Library/Logs/Homebrew/ghc/08.make:

rts/posix/GetTime.c:42:44: error:  error: expected expression

rts/posix/GetTime.c:43:44: error:
     error: use of undeclared identifier 'info'; did you mean 'int'?
        timer_scaling_factor_denom = (uint64_t)info.denom;
                                               ^~~~
                                               int

rts/posix/GetTime.c:43:44: error:  error: expected expression
6 errors generated.
`clang' failed in phase `C Compiler'. (Exit code: 1)
make[1]: *** [rts/dist/build/posix/GetTime.p_o] Error 1
make[1]: *** Waiting for unfinished jobs....
make: *** [all] Error 2

Just a hunch, but maybe some includes aren't being included properly, and some types aren't defined properly.

Did a gist-logs: https://gist.github.com/anonymous/2e04db4167fd75d8b9104be5a0b0c65e
Not entirely urgent since I'll just install Haskell Platform using the pkg.

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commented Jun 15, 2016

@zhiayang Looks like the actual error came slightly earlier in the output:

rts/posix/GetTime.c:40:5: error:
     error: use of undeclared identifier 'mach_timebase_info_data_t'
        mach_timebase_info_data_t info;
        ^
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commented Jun 15, 2016

I can repro; looking into it.

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commented Jun 15, 2016

wxmac is a known issue at least, fixed in head apparently. Will add it my the top comment.

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commented Jun 15, 2016

I see what's wrong with GHC. This is an upstream bug, I'll submit a patch upstream.

Sierra introduces clock_gettime, which wasn't included in previous versions of OS X. It's a POSIX function to retrieve time, either realtime or monotonic. OS X also includes a Mach-specific monotonic time function.

The initializeTimer function in GHC's rts/posix/GetTime.c has some Darwin-specific behaviour using the mach time structs/functions:

#ifdef darwin_HOST_OS
static uint64_t timer_scaling_factor_numer = 0;
static uint64_t timer_scaling_factor_denom = 0;
#endif

void initializeTimer()
{
#ifdef darwin_HOST_OS
    mach_timebase_info_data_t info;
    (void) mach_timebase_info(&info);
    timer_scaling_factor_numer = (uint64_t)info.numer;
    timer_scaling_factor_denom = (uint64_t)info.denom;
#endif
}

However, everywhere else that uses time functions guards against both darwin_HOST_OS and HAVE_CLOCK_GETTIME. This includes Clock.h, which guards its includes like so:

#ifdef HAVE_CLOCK_GETTIME
# ifdef _POSIX_MONOTONIC_CLOCK
#  define CLOCK_ID CLOCK_MONOTONIC
# else
#  define CLOCK_ID CLOCK_REALTIME
# endif
#elif defined(darwin_HOST_OS)
# include <mach/mach.h>
# include <mach/mach_time.h>
#endif

e.g., the mach_time header won't get included if clock_gettime is available. This can be fixed by improving the guard in initializeTimer, so it skips using any of the mach functions if clock_gettime is available.

@mistydemeo mistydemeo referenced this issue Jun 16, 2016

Closed

ghc: fix build on 10.12 #2029

4 of 4 tasks complete
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commented Jun 16, 2016

Ah, thank you @mistydemeo. seems weird apple adds POSIX compliance somewhere, then breaks it elsewhere (read: nm issues over with ghc people)

Also another broken package: homebrew-versions/llvm37
Error here:

Last 15 lines from /Users/zhiayang/Library/Logs/Homebrew/llvm37/04.make:
SYMROOT=/private/tmp/llvm37-20160616-84812-n12rra/llvm-3.7.1.src/projects/libcxx

cd lib && ./buildit
+ for FILE in '../src/*.cpp'
+ /Applications/Xcode-beta.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -c -g -Os -arch i386 -arch x86_64 -nostdinc++ -std=c++11 -fstrict-aliasing -Wall -Wextra -Wshadow -Wconversion -Wpadded -Wstrict-aliasing=2 -Wstrict-overflow=4 -isysroot /Applications/Xcode-beta.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk -I../include ../src/algorithm.cpp
In file included from ../src/algorithm.cpp:11:
In file included from ../include/random:1645:
../include/string:1938:44: error: 'basic_string<_CharT, _Traits, _Allocator>' is missing exception specification 'noexcept(is_nothrow_copy_constructible<allocator_type>::value)'
basic_string<_CharT, _Traits, _Allocator>::basic_string(const allocator_type& __a)
                                           ^
../include/string:1326:40: note: previous declaration is here
    _LIBCPP_INLINE_VISIBILITY explicit basic_string(const allocator_type& __a)
                                       ^
1 error generated.
make: *** [install] Error 1

Appears something in libcxx broke. Worked in 10.11, obviously. Gist is here:
https://gist.github.com/anonymous/b01ec33f72ed02ee66aaaac068332e4f#file-02-make-cc

Again not that urgent, because it turns out llvm38 installs, so I have something else to use.
Thanks again.

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commented Jun 16, 2016

libgcrypt builds with optimization turned off. Something's clearly different about clang 8.0, wonder if the bug's on the clang side.

EDIT: also builds -O1; it's just broken with -Os and -O2.

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commented Jun 16, 2016

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commented Jun 16, 2016

Feel free to edit my original post to add/remove to/from the list as desired Misty, and other maintainers.

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commented Jun 16, 2016

After getting through haskell-stack's dependencies by retrying a few times, stack itself fails with an interesting error:

[ 4 of 87] Compiling System.Process.Read ( src/System/Process/Read.hs, dist/dist-sandbox-2c433b3d/build/System/Process/Read.o )
ghc: panic! (the 'impossible' happened)
  (GHC version 8.0.1 for x86_64-apple-darwin):
    Loading temp shared object failed: dlopen(/var/folders/4d/rttdp_9d2s7f36zplgwnqrgr0000gn/T/ghc79664_0/libghc_44.dylib, 5): no suitable image found.  Did find:
    /var/folders/4d/rttdp_9d2s7f36zplgwnqrgr0000gn/T/ghc79664_0/libghc_44.dylib: malformed mach-o: load commands size (40192) > 32768

https://gist.github.com/8e005710eab17139c02267bac3029e33

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commented Jun 16, 2016

@DomT4 wxmac 3.1.0 (the --devel version) builds fine on 10.12. I'm going to guess that this was fixed by wxWidgets/wxWidgets@5ba67c6, which removed Carbon support and in the process excised a lot of places that used Quicktime. That's far too big to backport to 3.0.2, but with any luck there will be a stable wx that includes this by the time Sierra is out.

mistydemeo added a commit that referenced this issue Jun 16, 2016

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commented Jun 16, 2016

GTK+3 fails trying to find CUPS: https://gist.github.com/fa1be8e62572fcfa2c4ea1b6ecc8ff29

checking for cups-config... /usr/bin/cups-config
configure: error: CUPS >= 1.2 not found

I'm guessing it may be a regex bug, since CUPS on El Cap is 1.6 whereas CUPS on Sierra is 2.2.

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commented Jun 16, 2016

The CUPS issue is known, Macports carries a patch: https://trac.macports.org/browser/trunk/dports/gnome/gtk3/files/cups.patch Doesn't look like it was reported upstream though.

mistydemeo added a commit that referenced this issue Jun 16, 2016

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commented Jun 17, 2016

@mistydemeo You are magical; thank you for hunting a bunch of these down.

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commented Jun 17, 2016

perl is broken: https://gist.github.com/mistydemeo/37cb3474a09c51b7356683a31b41352b

"../../miniperl" "-I../../lib" "-I../../lib" "../../lib/ExtUtils/xsubpp"  -typemap "../../lib/ExtUtils/typemap" -typemap "typemap"  HiRes.xs > HiRes.xsc && mv HiRes.xsc HiRes.c
cc -c   -fno-common -DPERL_DARWIN -mmacosx-version-min=10.12 -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -DPERL_USE_SAFE_PUTENV -Wall -Werror=declaration-after-statement -Wextra -Wc++-compat -Wwrite-strings -Wthread-safety -O3   -DVERSION=\"1.9733\" -DXS_VERSION=\"1.9733\"  "-I../.."  -DTIME_HIRES_NANOSLEEP -DTIME_HIRES_CLOCK_GETTIME -DTIME_HIRES_CLOCK_GETRES -DTIME_HIRES_CLOCK_NANOSLEEP -DTIME_HIRES_CLOCK -DTIME_HIRES_STAT=1 -DATLEASTFIVEOHOHFIVE HiRes.c
HiRes.xs:945:15: error: use of undeclared identifier 'darwin_time_mutex'
  MUTEX_INIT(&darwin_time_mutex);
              ^
1 error generated.
make[1]: *** [HiRes.o] Error 1
cc -c   -fno-common -DPERL_DARWIN -mmacosx-version-min=10.12 -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -DPERL_USE_SAFE_PUTENV -Wall -Werror=declaration-after-statement -Wextra -Wc++-compat -Wwrite-strings -Wthread-safety -O3   -DVERSION=\"1.9733\" -DXS_VERSION=\"1.9733\"  "-I../.."  -DTIME_HIRES_NANOSLEEP -DTIME_HIRES_CLOCK_GETTIME -DTIME_HIRES_CLOCK_GETRES -DTIME_HIRES_CLOCK_NANOSLEEP -DTIME_HIRES_CLOCK -DTIME_HIRES_STAT=1 -DATLEASTFIVEOHOHFIVE HiRes.c
HiRes.xs:945:15: error: use of undeclared identifier 'darwin_time_mutex'
  MUTEX_INIT(&darwin_time_mutex);
              ^

Looks like a clock_gettime bug again.

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commented Jun 17, 2016

Yup:

#if defined(PERL_DARWIN)
#  ifdef USE_ITHREADS
  MUTEX_INIT(&darwin_time_mutex);
#  endif
#endif

As with GHC, the code that defines the struct is guarded by an #ifdef that checks for whether realtime clock functions are available, but code that uses the struct is used unconditionally on Darwin.

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commented Sep 16, 2016

screenresolution problem reported upstream. Not holding my breath: no commits since May 2014.

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commented Sep 16, 2016

same GHC panic attempting to build git-annex 🙈

stack itself is off the hook.

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commented Sep 16, 2016

Looks like we'll have to do the unavoidable: rebuild GHC, possibly a dozen times.

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commented Sep 16, 2016

upstream GHC is looking into it as well since Stack has been ruled out as the cause.

so splendid: https://gist.github.com/ilovezfs/67795d2df41f74fc25f448d48600671d

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commented Sep 16, 2016

GHC just won the annual best fatal error message award:

ghc: panic! (the 'impossible' happened)
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commented Sep 16, 2016

Not sure if there's any more value in spamming this issue, but jack is broken:

https://bot.brew.sh/view/Testing/job/Homebrew%20Sierra%20Testing/782/version=sierra_2/testReport/junit/brew-test-bot/sierra/install_jack/

TIMER_ABSTIME is undefined for clock_nanosleep. I thought OS X conforms to POSIX 2001?

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commented Sep 17, 2016

open-scene-graph broken: https://bot.brew.sh/view/Testing/job/Homebrew%20Sierra%20Testing/790/version=sierra_2/testReport/junit/brew-test-bot/sierra/install_open_scene_graph/

Rather interesting:

CMake Error at CMakeLists.txt:183 (LIST):
  list index: 2 out of range (-2, 1)
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commented Sep 17, 2016

irrlicht is broken: https://bot.brew.sh/view/Testing/job/Homebrew%20Sierra%20Testing/796/version=sierra_2/testReport/junit/brew-test-bot/sierra/install_irrlicht/

/tmp/irrlicht-20160917-64459-123oi19/irrlicht-1.8.3/source/Irrlicht/zlib/inflate.c:1491:61: warning: shifting a negative signed value is undefined [-Wshift-negative-value]
    if (strm == Z_NULL || strm->state == Z_NULL) return -1L << 16;
                                                        ~~~ ^
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commented Sep 17, 2016

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commented Sep 18, 2016

dshb is in Swift 2.2 so it clearly won't build against Xcode 8. Reported upstream beltex/dshb#36. Will boneyard if there's no response for a while.

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commented Sep 19, 2016

Is this is a problem of Xcode?

System: OS X EI Captian 10.11.6
Xcode: Version 7.3.1 (7D1014)

`brew install wine --devel
==> Installing dependencies for wine: pkg-config
==> Installing wine dependency: pkg-config
==> Downloading https://homebrew.bintray.com/bottles/pkg-config-0.29.1_2.el_capitan.bottle.tar.gz
######################################################################## 100.0%
==> Pouring pkg-config-0.29.1_2.el_capitan.bottle.tar.gz
🍺 /usr/local/Cellar/pkg-config/0.29.1_2: 10 files, 627.3K
==> Installing wine
==> Using the sandbox
==> Downloading https://dl.winehq.org/wine/source/1.9/wine-1.9.19.tar.bz2
Already downloaded: /Users/Tsing/Library/Caches/Homebrew/wine-1.9.19.tar.bz2
==> Downloading https://bugs.winehq.org/attachment.cgi?id=52384
Already downloaded: /Users/Tsing/Library/Caches/Homebrew/wine--patch-30766403f5064a115f61de8cacba1defddffe2dd898b59557956400470adc699.cgi
==> Patching
==> Applying attachment.cgi
patching file dlls/wined3d/surface.c
Hunk #1 succeeded at 1465 (offset -816 lines).
Hunk #2 succeeded at 1811 (offset -816 lines).
==> ./configure --prefix=/usr/local/Cellar/wine/1.9.19 --without-mpg123
==> make install
Last 15 lines from /Users/Tsing/Library/Logs/Homebrew/wine/02.make:
bison -p parser_ -o parser.tab.c parser.y
clang -m32 -c -o parser.yy.o parser.yy.c -I. -I../../include -D__WINESRC__ -Wall -pipe -fno-strict-aliasing
-Wdeclaration-after-statement -Wempty-body -Wignored-qualifiers -Wstrict-prototypes -Wtype-limits
-Wvla -Wwrite-strings -Wpointer-arith -gdwarf-2 -gstrict-dwarf -fno-omit-frame-pointer -g -O2 -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0
clang -m32 -c -o parser.tab.o parser.tab.c -I. -I../../include -D__WINESRC__ -Wall -pipe -fno-strict-aliasing
-Wdeclaration-after-statement -Wempty-body -Wignored-qualifiers -Wstrict-prototypes -Wtype-limits
-Wvla -Wwrite-strings -Wpointer-arith -gdwarf-2 -gstrict-dwarf -fno-omit-frame-pointer -g -O2 -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0
clang -m32 -c -o parser.tab.o parser.tab.c -I. -I../../include -D__WINESRC__ -Wall -pipe -fno-strict-aliasing
-Wdeclaration-after-statement -Wempty-body -Wignored-qualifiers -Wstrict-prototypes -Wtype-limits
-Wvla -Wwrite-strings -Wpointer-arith -gdwarf-2 -gstrict-dwarf -fno-omit-frame-pointer -g -O2 -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=0
clang -m32 -o wrc dumpres.o genres.o newstruc.o po.o readres.o translation.o utils.o wrc.o writeres.o
parser.tab.o parser.yy.o ../../libs/port/libwine_port.a ../../libs/wpp/libwpp.a
clang -m32 -o widl client.o expr.o hash.o header.o proxy.o register.o server.o typegen.o typelib.o
typetree.o utils.o widl.o write_msft.o parser.tab.o parser.yy.o ../../libs/port/libwine_port.a
../../libs/wpp/libwpp.a

READ THIS: https://git.io/brew-troubleshooting
If reporting this issue please do so at (not Homebrew/brew):
https://github.com/Homebrew/homebrew-core/issues`

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commented Sep 19, 2016

@lightsing Please follow https://git.io/brew-troubleshooting and post your gist-logs.

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commented Sep 19, 2016

so why does it fail for @mateusdelbianco and me?

Indeed. I've been trying to get up to speed on the python/sqlite3 problem for days, off and on. This issue came up in my search and seemed to be my most promising lead toward finding a solution or workaround.

I'm running GM everything. I'd eventually resorted to nuking /usr/local and reinstalling Homebrew. Even then: my python 2 wouldn't import sqlite3. I believe I was facing the same results as @extink.

As it turns out, @zmwangx provided a vital clue above but I'd missed it so I'll be explicit for drive-by readers like me: the CLI tools are no longer considered optional or equivalent to the Xcode app.

Once I used xcode-select --install I was finally able to install and use Python with sqlite3 support.

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commented Sep 19, 2016

Ah, that might also explain why it works for me. I have no need for the full Xcode so I generally only xcode-select --install. However that should be equivalent to installing Xcode and then in the preferences checking the box/thing that makes it install the CLT, which afaik always needed to happen to get the CLT in previous Xcode versions too.

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commented Sep 19, 2016

Actually python and python3 were both working on one of my machines and failing on another. Now that people mentioned, one difference between my machines was exactly the CLT. The one that was working had CLT installed, while the failing had only Xcode. Shame on me for not noticing this huge difference earlier...

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commented Sep 20, 2016

It might be worth noting that 10.12 has effectively removed QTKit.framework as well. It still technically exists, but everything besides the QTMovieModernizer class was removed, and what is left is only there to covert "legacy" media resources into a format that AVFoundation.framework can handle. Therefore, any formula that explicitly or implicitly built against QTKit will probably be "broken" to some extent.

EDIT:
Reference: https://developer.apple.com/reference/qtkit

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commented Sep 21, 2016

Off topic, but this bodes well for my analog video capture device, which is based on an Empia 28xx chipset, and is only supported by a QuickTime extension that was relicensed from echofx.com by Geniatech and company. I suppose maybe one of them will get off their dead butt and make an AVFoundation driver, if they ever realize that 10.9 is no longer new.

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commented Sep 21, 2016

shadowsocks-libev failed on 10.11 with Xcode 8, not 10.12.

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commented Sep 23, 2016

Turns out that screenresolution's failure is an Xcode 8 problem, not specifically a Sierra one. It bombs out identically on ElCap with Xcode 8.

I have reported this nugget upstream also.

@kanekotic kanekotic referenced this issue Sep 24, 2016

Closed

Qt55 Failed to build on 10.12 #5163

2 of 2 tasks complete
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commented Sep 25, 2016

I am having Qt problem while I am trying to install gnuplot

brew install gnuplot --with-qt5 and brew install gnuplot --with-qt fails I guess it is related to this issue. Do you have any idea?

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commented Sep 25, 2016

I think this issue is too long right now and approaching worthlessness because the top post hasn't been updated (not OP's fault). @DomT4 What about we lock this and let people open individual reports going forward?

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commented Sep 27, 2016

Aye. This served its purpose well, and I appreciate everyone's contributions and journey with us through 10.12/Xcode 8 being prerelease but let's shuffle things off into individual issues at this point as we have in previous years.

@DomT4 DomT4 closed this Sep 27, 2016

@Homebrew Homebrew locked and limited conversation to collaborators Sep 27, 2016

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