Discovery workflow with batch alignment using CytoNorm -- link broken

[mariecrane]

I'm trying to access your discovery workflow with batch alignment using CytoNorm but the link appears to be broken. Is there documentation available elsewhere while the site is down?

[tomashhurst]

Ah apologies that’s our fault, will update it shortly — but here is the actual link: https://unisyd-my.sharepoint.com/personal/thomas_ashhurst_sydney_edu_au/_layouts/15/onedrive.aspx?id=%2Fpersonal%2Fthomas%5Fashhurst%5Fsydney%5Fedu%5Fau%2FDocuments%2FShared%2FSpectre%20PDFs%2FDiscovery%20workflow%20with%20batch%20alignment%20using%20CytoNorm%2Dv19%2D20240415%5F044409%2Epdf&parent=%2Fpersonal%2Fthomas%5Fashhurst%5Fsydney%5Fedu%5Fau%2FDocuments%2FShared%2FSpectre%20PDFs&ga=1 Tom

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________________________________ From: Marie Crane ***@***.***> Sent: Tuesday, May 14, 2024 16:13 To: ImmuneDynamics/Spectre ***@***.***> Cc: Subscribed ***@***.***> Subject: [ImmuneDynamics/Spectre] Discovery workflow with batch alignment using CytoNorm -- link broken (Issue #189) I'm trying to access your discovery workflow with batch alignment using CytoNorm but the link<https://immunedynamics.io/spectre/cytometry/%5Bhttps://wiki.centenary.org.au/x/zGCdCw%5D(https://unisyd-my.sharepoint.com/:b:/g/personal/thomas_ashhurst_sydney_edu_au/ER-lPRlANL5BroO3cYIV1XMBBKETa4Ufa_4KtqjJtxyPUA?e=a0ashi)> appears to be broken. Is there documentation available elsewhere while the site is down? — Reply to this email directly, view it on GitHub<#189>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACZYS63YSU57EH4JTLBVQ3LZCIS27AVCNFSM6AAAAABHWMQT56VHI2DSMVQWIX3LMV43ASLTON2WKOZSGI4TKNZVGY4DGMA>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[mariecrane]

This link isn't working for me either. I can wait if you're working to fix it! Just wanted to make sure it was on your radar.

[tomashhurst]

Hmm that's very odd -- I can see it OK even if not signed in, maybe I've broken something. If you email me at thomas.ashhurst@sydney.edu.au I can just send you the PDF.

[tomashhurst]

@mariecrane updated page for the CytoNorm workflow here: https://immunedynamics.io/spectre/cytonorm/. Give it a try and let us know if it makes sense.