@@ -33,53 +33,53 @@ itkwidgets
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:target: https://zenodo.org/badge/latestdoi/121581663
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:alt: Software citation DOI
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- Interactive `Jupyter <https://jupyter.org/ >`_ widgets to visualize images,
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- point sets, and meshes.
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+ Interactive Jupyter _ widgets to visualize images, point sets, and meshes.
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.. image :: https://i.imgur.com/d8aXycW.png
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:width: 800px
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:alt: itkwidgets chest CT in JupyterLab
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**Key Features **:
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- - Visualize 2D and 3D images, point sets, and geometry, e.g. meshes, in Jupyter
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+ - Visualize 2D and 3D images, point sets, and geometry, e.g. meshes, in Jupyter _
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- Support for
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- - NumPy array images
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- - itk.Image
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- - Dask array images
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- - vtk.vtkImageData
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- - pyvista.UniformGrid
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- - vtkplotter.Volume
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- - ImageJ / Fiji / ImageJ2 images
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+ - ` NumPy array < https://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.html >`_ images
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+ - ` itk.Image < https://itkpythonpackage.readthedocs.io/en/latest/Quick_start_guide.html >`_
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+ - ` Dask array < https://docs.dask.org/en/latest/array.html >`_ images
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+ - ` vtk.vtkImageData < https://vtk.org >`_
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+ - ` pyvista.UniformGrid < https://pyvista.org >`_
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+ - ` vtkplotter.Volume < https://vtkplotter.embl.es/index.html >`_
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+ - ` pyimagej ImageJ / Fiji / ImageJ2 images < https://github.com/imagej/pyimagej >`_
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- Additional NumPy array-like objects
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- - SimpleITK.Image
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+ - ` SimpleITK.Image < https://simpleitk-prototype.readthedocs.io/en/latest/user_guide/plot_image.html#sphx-glr-user-guide-plot-image-py >`_
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- NumPy array point sets
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- - itk.PointSet
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- - vtk.vtkPolyData point sets
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- - pyvista.PolyData point sets
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-
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- - itk.Mesh
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- - itk.PolyLineParametricPath
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- - vtk.vtkPolyData
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- - vtk.vtkStructuredGrid
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- - vtk.vtkUnstructuredGrid
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- - vtk.vtkActor
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- - vtk.vtkVolume
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- - vtk.vtkAssembly
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- - pyvista.PolyData
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- - pyvista.StructuredGrid
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- - pyvista.UnstructuredGrid
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- - vtkplotter.Actor
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- - vtkplotter.Assembly
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- - skan.csr.Skeleton
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+ - ` itk.PointSet < https://itk.org/Doxygen/html/classitk_1_1PointSet.html >`_
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+ - ` vtk.vtkPolyData < https://vtk.org/doc/nightly/html/classvtkPolyData.html >`_ point sets
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+ - ` pyvista.PolyData < https://docs.pyvista.org/core/points.html >`_ point sets
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+
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+ - ` itk.Mesh < https://itk.org/Doxygen/html/classitk_1_1Mesh.html >`_
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+ - ` itk.PolyLineParametricPath < https://itk.org/Doxygen/html/classitk_1_1PolyLineParametricPath.html >`_
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+ - ` vtk.vtkPolyData < https://vtk.org/doc/nightly/html/classvtkPolyData.html >`_
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+ - ` vtk.vtkStructuredGrid < https://vtk.org/doc/nightly/html/classvtkStructuredGrid.html >`_
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+ - ` vtk.vtkUnstructuredGrid < https://vtk.org/doc/nightly/html/classvtkUnstructuredGrid.html >`_
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+ - ` vtk.vtkActor < https://vtk.org/doc/nightly/html/classvtkActor.html >`_
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+ - ` vtk.vtkVolume < https://vtk.org/doc/nightly/html/classvtkVolume.html >`_
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+ - ` vtk.vtkAssembly < https://vtk.org/doc/nightly/html/classvtkAssembly.html >`_
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+ - ` pyvista.PolyData < https://docs.pyvista.org/core/points.html >`_
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+ - ` pyvista.StructuredGrid < https://docs.pyvista.org/core/point-grids.html#structured-grid-creation >`_
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+ - ` pyvista.UnstructuredGrid < https://docs.pyvista.org/core/point-grids.html#unstructured-grid-creation >`_
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+ - ` vtkplotter.Actor < https://vtkplotter.embl.es/index.html >`_
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+ - ` vtkplotter.Assembly < https://vtkplotter.embl.es/index.html >`_
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+ - ` skan.csr.Skeleton < https://jni.github.io/skan/api/skan.csr.html#module-skan.csr >`_
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- Exquisite volume rendering
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- Tri-plane volume slicing
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- Innovative, powerful opacity transfer function / window / level widget
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- Anisotropic voxel spacing supported
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- Image line profile widget
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+ - Compare images widget
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- Widgets to select solid colors for geometry or colormaps when point data or
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cell data is availble
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- Visualize point sets as points or spheres and interactively adjust the point
@@ -363,3 +363,5 @@ To develop for Jupyter Lab, additionally run::
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This project is under active development. Its API and behavior may change at
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any time. We mean it.
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+
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+ .. _Jupyter : https://jupyter.org/
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