🧬 Bay Area | 🌿 AI x Bio | 🌐 jlsteenwyk.com
- ✂️ ClipKIT - a multiple sequence alignment-trimming algorithm for phylogenomics
- 🌿 PhyKIT - a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
- 🧰 BioKIT - a versatile toolkit for processing and analyzing diverse types of sequence data
- 🎣 orthofisher - a broadly applicable tool for automated gene identification and retrieval
- 🪚 orthosnap - a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
- 🔎 orthohmm - inference of ortholog groups using hidden Markov models
- 🤹 agent-skills - a collection of skills for agents
- 🦬 plmtogo - a small protein language model for GO-conditioned protein sequence generation
- 🎼 capo - a management system to turn multiple AI subscriptions into a team of agents
- 📰 biotech_business_weekly - automated scraping for biotech business news
- 🧠 bioai_newsletter - automated scraping for news at the intersection of biology and AI
- 👁️ cyclops - a focus app that blurs everything except the selected window to help you focus
- 🌆 gh-skyline-python - a Python implementation of gh-skyline
- 🖥️ ascii pal - a desktop buddy made of ascii characters
- 🌈 ggpubfigs - colorblind-friendly color palettes and ggplot2 extensions for publication-quality scientific figures
- 📊 pypubfigs - publication-quality themes and colorblind-friendly palettes for seaborn and matplotlib
📬 jlsteenwyk [at] gmail.com • 🦋 @jlsteenwyk.bsky.social • 🐦 @JLSteenwyk • 📝 genomely.substack.com