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1. Eukaryotyping Eukaryotyping Public

   This repository contains the algorithms first described in the manuscript that can be accessed under the following DOI: https://doi.org/10.1017/S0031182019000581

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2. CDC-Complete-Cyclospora-typing-workflow-ALPHA-TEST CDC-Complete-Cyclospora-typing-workflow-ALPHA-TEST Public

   Call haplotypes from deep amplicon sequence data when you have a set of reference haplotypes in fasta format. Also calls new haplotypes. Specific for Cyclospora.

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3. Eukaryotpying-Python Eukaryotpying-Python Public

   Python implementation of Plucinski's Bayesian algorithm and Barratt's heuristic definition of genetic distance

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4. markdown-here markdown-here Public

   Forked from adam-p/markdown-here

   Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

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5. Hierarchical-tree-dissection-framework Hierarchical-tree-dissection-framework Public

   Framework to automate the dissection of hierarchical trees into epidemiologically-meaningful partitions.

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