Merge 9254f75 into 527129d

.travis.yml

@@ -16,6 +16,7 @@ before_install:
 - pip install --upgrade pylint
 - pip install bmt
 - pip install -r requirements.txt
+- pip install yamllint
 install:
 - pip install .[test]
 before_script:
@@ -33,6 +34,7 @@ script:
 - coverage xml
 - python -m pylint --errors-only --exit-zero kg_covid_19
 - mypy --strict-optional kg_covid_19
+- yamllint -d relaxed merge.yaml download.yaml
 - 'if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then sonar-scanner; fi' # sonar only on non-PRs
 
 after_success:

download.yaml

@@ -71,7 +71,7 @@
   local_name: CORD-19_1_3.zip
 
 # SciBite CORD-19 entity co-occurrences v1.0
-#-
+# -
 #  url: https://github.com/SciBiteLabs/CORD19/raw/master/sentence-co-occurrence-CORD-19/1.0/cv19_scc.zip
 #  local_name: cv19_scc.zip
 

merge.yaml

@@ -1,10 +1,10 @@
+---
 target:
    drug-central:
       type: tsv
       filename:
          - data/transformed/drug_central/nodes.tsv
          - data/transformed/drug_central/edges.tsv
-
    pharmgkb:
       type: tsv
       filename:
@@ -20,51 +20,41 @@ target:
       filename:
          - data/transformed/ttd/nodes.tsv
          - data/transformed/ttd/edges.tsv
-
    zhou-host-proteins:
       type: tsv
       filename:
          - data/transformed/zhou_host_proteins/nodes.tsv
          - data/transformed/zhou_host_proteins/edges.tsv
-
    SciBite-CORD-19:
       type: tsv
       filename:
          - data/transformed/SciBite-CORD-19/nodes.tsv
          - data/transformed/SciBite-CORD-19/edges.tsv
-
    sars-cov-2-gene-annot:
       type: tsv
       filename:
          - data/transformed/sars_cov_2_gene_annot/nodes.tsv
          - data/transformed/sars_cov_2_gene_annot/edges.tsv
-
    intact:
       type: tsv
       filename:
          - data/transformed/intact/nodes.tsv
          - data/transformed/intact/edges.tsv
-         -
-
    gene-ontology:
       type: tsv
       filename:
          - data/transformed/ontologies/go-plus_nodes.tsv
          - data/transformed/ontologies/go-plus_edges.tsv
-
    mondo-ontology:
       type: tsv
       filename:
          - data/transformed/ontologies/mondo_nodes.tsv
          - data/transformed/ontologies/mondo_edges.tsv
-
    hp-ontology:
       type: tsv
       filename:
          - data/transformed/ontologies/hp_nodes.tsv
          - data/transformed/ontologies/hp_edges.tsv
-
 destination:
    type: tsv
    filename: merged-kg
-