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Merge pull request #138 from LSSTDESC/tqz/utils_refactor
Utils renaming
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,107 +1,106 @@ | ||
| { | ||
| "cells": [ | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "ec47ab0a", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "# Run a Saved Pipeline\n", | ||
| "\n", | ||
| "**Author:** Eric Charles\n", | ||
| "\n", | ||
| "**Last Run Successfully:** April 26, 2023" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "ff1c1990", | ||
| "metadata": {}, | ||
| "source": [ | ||
| " \n", | ||
| "This notebook shows how to:\n", | ||
| "\n", | ||
| "1. Load a pipeline from a saved yaml file\n", | ||
| "\n", | ||
| "2. Run the loaded pipeline" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "a29a1b21", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "import os\n", | ||
| "import ceci\n", | ||
| "from rail.core.utils import find_rail_file\n", | ||
| "\n", | ||
| "# To create a catalog, you need a model of what the distrubutions of the colors \n", | ||
| "# are--that's what this flow file is:\n", | ||
| "flow_file = find_rail_file('examples_data/goldenspike_data/data/pretrained_flow.pkl')\n", | ||
| "os.environ['FLOWDIR'] = os.path.dirname(flow_file)" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "deaaff62", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "Each pipeline file has an associated config file. Whenever ceci reads in a pipeline file called `[name].yml`, it will automatically look for a configuration file `[name]_config.yml` in the same directory.\n", | ||
| "\n", | ||
| "Here, we read in our `pipe_example.yml` pipeline, which is associated with `pipe_example.config.yml`:" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "2657aca0", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "\n", | ||
| "p = ceci.Pipeline.read('pipe_example.yml')" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "38e445de", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "p.run()" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "cb8a7120", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "Yep, that's it." | ||
| ] | ||
| } | ||
| ], | ||
| "metadata": { | ||
| "kernelspec": { | ||
| "display_name": "Python 3 (ipykernel)", | ||
| "language": "python", | ||
| "name": "python3" | ||
| }, | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.11.4" | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 5 | ||
| } | ||
|
|
||
| "cells": [ | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "ec47ab0a", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "# Run a Saved Pipeline\n", | ||
| "\n", | ||
| "**Author:** Eric Charles\n", | ||
| "\n", | ||
| "**Last Run Successfully:** April 26, 2023" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "ff1c1990", | ||
| "metadata": {}, | ||
| "source": [ | ||
| " \n", | ||
| "This notebook shows how to:\n", | ||
| "\n", | ||
| "1. Load a pipeline from a saved yaml file\n", | ||
| "\n", | ||
| "2. Run the loaded pipeline" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "a29a1b21", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "import os\n", | ||
| "import ceci\n", | ||
| "from rail.utils.path_utils import find_rail_file\n", | ||
| "\n", | ||
| "# To create a catalog, you need a model of what the distrubutions of the colors \n", | ||
| "# are--that's what this flow file is:\n", | ||
| "flow_file = find_rail_file('examples_data/goldenspike_data/data/pretrained_flow.pkl')\n", | ||
| "os.environ['FLOWDIR'] = os.path.dirname(flow_file)" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "deaaff62", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "Each pipeline file has an associated config file. Whenever ceci reads in a pipeline file called `[name].yml`, it will automatically look for a configuration file `[name]_config.yml` in the same directory.\n", | ||
| "\n", | ||
| "Here, we read in our `pipe_example.yml` pipeline, which is associated with `pipe_example.config.yml`:" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "2657aca0", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "\n", | ||
| "p = ceci.Pipeline.read('pipe_example.yml')" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "code", | ||
| "execution_count": null, | ||
| "id": "38e445de", | ||
| "metadata": {}, | ||
| "outputs": [], | ||
| "source": [ | ||
| "p.run()" | ||
| ] | ||
| }, | ||
| { | ||
| "cell_type": "markdown", | ||
| "id": "cb8a7120", | ||
| "metadata": {}, | ||
| "source": [ | ||
| "Yep, that's it." | ||
| ] | ||
| } | ||
| ], | ||
| "metadata": { | ||
| "kernelspec": { | ||
| "display_name": "Python 3 (ipykernel)", | ||
| "language": "python", | ||
| "name": "python3" | ||
| }, | ||
| "language_info": { | ||
| "codemirror_mode": { | ||
| "name": "ipython", | ||
| "version": 3 | ||
| }, | ||
| "file_extension": ".py", | ||
| "mimetype": "text/x-python", | ||
| "name": "python", | ||
| "nbconvert_exporter": "python", | ||
| "pygments_lexer": "ipython3", | ||
| "version": "3.10.0" | ||
| } | ||
| }, | ||
| "nbformat": 4, | ||
| "nbformat_minor": 5 | ||
| } |
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