GitHub - MASantos/Partanalyzer: Partanalyzer aims at being a general program for analyzing (sets of) partitions. It's useful for clustering problems in general, and in particular for bioinformatics problems dealing with multiple sequence alignments.

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Partanalyzer aims at being a general program for analyzing (sets of) partitions. It's useful for clustering problems in general, and in particular for bioinformatics problems dealing with multiple sequence alignments.

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Name		Name	Last commit message	Last commit date
Latest commit History 164 Commits
Docs		Docs
Tests		Tests
src		src
CONTRIBUTORS		CONTRIBUTORS
COPYING		COPYING
COPYRIGHT		COPYRIGHT
Doxyfile		Doxyfile
License.txt		License.txt
MAN		MAN
README		README
TODO		TODO
cp2users		cp2users
gpl_header.txt		gpl_header.txt
graph.h		graph.h
tags		tags

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In order to compile just issue
	make 

this updates the tags file and generates the executable.

To (re)build the documentation issue
	make documention

To remove the executable and tags file
	make distclean


List of contents:
dir	Docs		Code documentation automatically generated with doxygen. Depends on how good the comment lines in the source code are.
dir	Tests		Contains several tests files and scripts to check the partanalyze executable.
dir	src  		Contains all source files and corresponding Makefile to build the executable.
file	Doxyfile	Configuration file for doxygen. Required to build the Docs directory.
file	Makefile	Makefile for partanalyze, its tests and documentation.
file	MAN		Brief manual for partanalzer. Basically contains the full help output one gets with `partanalyze --help'.
file	README		This file.
file	TODO		Lists pending improvements 
file	src/kk.cc	Testbench for implementing unfamiliar C++ code, like using the library dirent.h for dealing with directories.