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Releases: MMatinGerami/crc-singlecell-reference-mapping

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0.5.0

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@MMatinGerami MMatinGerami released this 29 Sep 06:42
  • Calibration of scANVI confidence under the cohort shift, with temperature scaling fitted on reference patients (scmap.calibration, scripts/16_calibration_shift.py).
  • Two-hospital site-shift experiment repeated with scANVI (scripts/15_site_shift_pelka_scanvi.py): a mixed reference raises macro-F1 and restores 90% coverage on both hospitals.
  • scmap annotate command: maps a new query onto the saved scANVI reference and labels its cells with confidence and the pre-committed abstention flag.
  • Reference-size curve repeated with scANVI and scArches mapping (scripts/14_reference_size_scanvi.py); same plateau from six patients as the baseline.