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Extension of the metadata information sent to DataCite #61

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yvgrossmann opened this issue Mar 28, 2023 · 9 comments · Fixed by #73
Closed

Extension of the metadata information sent to DataCite #61

yvgrossmann opened this issue Mar 28, 2023 · 9 comments · Fixed by #73
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@helkv
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enhancement New feature or request

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@yvgrossmann
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yvgrossmann commented Mar 28, 2023 •
edited by helkv
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It might be useful to transfer further metadata information from Dataverse to DataCite, e.g.:

  • Topic Classifications
  • Study Type
  • Funding reference (Grant Information)
  • ...
@helkv
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helkv commented Apr 3, 2023 •
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The Dataverse -> Datacite Metadata-Mapping is hard coded in Dataverse. The following Metadata are mapped:

  • identifier -> identifier
  • author -> creator
    • authorName -> creatorName
    • authorIdentifier -> nameIdentifier
    • authorAffiliation -> affiliation (added in Edmond # 43)
  • title -> title
  • publisher
  • publicationYear
  • resourceType
  • global file id -> relatedIdentifier (no global file id in Edmond/Dataverse)
  • dsDescriptionValue -> description
  • datasetContact & producer -> contributor (no datasetContectName/Affiliation & producer in Edmond/Dataverse)
    • datasetContectName & producerName -> contributorName
    • datasetContactAffiliation & producerAffiliation -> affiliation

@helkv
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helkv commented Apr 3, 2023 •
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Related to #43

As described in #43: Changes in the export code would require a re-export afterwards:
https://guides.dataverse.org/en/latest/admin/metadataexport.html
However, a reexport does not send updated metadata to DataCite.

@yvgrossmann
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Perhaps the presentation from Vaidas Morkevičius at the Dataverse Community Meeting 2023 is helpful to solve this issue: https://osf.io/7xjtw p. 27-29

@helkv helkv added the enhancement New feature or request label Jun 21, 2023
@yvgrossmann
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My suggestions for the addition metadata mapping:

  • Topic Classifications
    • Term --> Subject (DataCite ID 6)
    • Vocabulary --> subjectScheme (DataCite ID 6.a)
    • Vocabulary URL --> valueURI (DataCite ID 6.c)
  • Study Type --> Subject (DataCite ID 6)
  • Funding reference (Grant Information) --> FundingReference (DataCite ID 19)

@yvgrossmann
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https://doi.org/10.5281/zenodo.8010998

@helkv
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helkv commented Aug 18, 2023

Solution approaches:

  1. Solution by Dataverse community
    There are several tickets and discussions about how to send more Metadata to DataCite.
    https://docs.google.com/document/d/1tNnvVh8jYY1g53BEwpJmMmm9w6Vgy_Q7RrmFjGnYOyA/edit
    https://docs.google.com/document/d/18Gw51vl14n9_s-zH_mpf-b2Mt7v5RJsNyPsNGSj6hmU/edit#heading=h.nj2o8up29v4c
    -> But up to now there is no solution implemented.

  2. Use of External Exporter
    External Exporters have been introduced to Dataverse with release v5.14. They can be used to create new selfcreated metadata export formats.
    https://guides.dataverse.org/en/5.14/developers/metadataexport.html
    -> But External Exporters are executed independent from and after the metadata xml is created and send to Datacite.

  3. Individual code adjustments
    The Dataverse code (DOIDataCiteRegisterService.generateXML()) can be adapted to extend the metadata send to DataCite. Examples for related implementations are:
    issue #5277: first implementation step for exporting related publicat… IQSS/dataverse#8357
    OpenAireExportUtil.writeFundingReferencesElement()
    -> But customizable metadata like Grant Information are not intended to be processed by the current implementation of the DOIDataCiteRegisterService.

helkv added a commit that referenced this issue Aug 28, 2023
@helkv
#61 First draft: Add 'Funding Reference' to DataCite Metadata XML
e2d3112
helkv added a commit that referenced this issue Aug 28, 2023
@helkv
#61 First draft: Use pretty print for DataCite Metadata XML
ba5fbff 
Problem: formatAsInlineTags can not be changed in Jsoup => Alle xml Elements and Values are in new lines
helkv added a commit that referenced this issue Aug 28, 2023
@helkv
#61 First draft: Use workaround to format inlineTags in Jsoup
8dc51a7 
Problem: Java reflection should not be used to change the inlineTags in Jsoup
helkv added a commit that referenced this issue Aug 28, 2023
@helkv
#61 Revert First draft (Jsoup) 3 commits
d84e8e5
helkv added a commit that referenced this issue Aug 28, 2023
@helkv
#61 Add 'Funding Reference' to DataCite Metadata XML (Second draft)
c14c48a 
Add 'Funding Reference' to DataCite Metadata XML using:
- Java DOM Parser
- Extra prettyPrint method
- Inner Class DataCiteMetadataUtil
helkv added a commit that referenced this issue Sep 5, 2023
@helkv
#61 Add the case: Multiple or empty 'Funding Reference' values
bc48f0c
@yvgrossmann
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Using the DataCIte Metadata 4.4 I would suggest funderName (19.1) and and awardNumber (19.3).

helkv added a commit that referenced this issue Sep 11, 2023
@helkv
#61 Refactoring + Fix: funderName (grantNumberAgency) is required
898389b
helkv added a commit that referenced this issue Sep 14, 2023
@helkv
#61 Small adaptions + Refactoring
3b67d7b 
- Add check dvObject.isInstanceofDataset()
- Refactoring
@helkv helkv mentioned this issue Sep 15, 2023
Merged
@helkv helkv linked a pull request Sep 15, 2023 that will close this issue
Extend the metadata information sent to DataCite, by adding fundingReferences #73
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@helkv
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helkv commented Oct 2, 2023 •
edited
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For now only Grant Information (Funding reference) is added as extension to the metadata send to DataCite.

Grant Information is mapped to the Datacite Metadata schema as follows:

  • Grant Information (grantNumber) -> fundingReference
    • Grant Agency (grantNumberAgency) -> funderName [required for fundingReference in the Datacite Metadata schema]
    • Grant Number (grantNumberValue) -> awardNumber

After publishing a Dataset the Grant Information should be displayed in the DataCite Metadata Export (Dataverse Actions: (published) Dataset -> Metadata -> Export Metadata -> DataCite).
After publishing the Grant Information Metadata should also exist on DataCite's side (DataCite Actions: Open the Metadata of the DOI of the Dataset in DataCite Fabrica).

@haarli
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haarli commented Oct 6, 2023

Server: qa-edmond2 / qa.edmond.mpdl.mpg.de
Testdate: 08.10.2023
Browser: ff
Version: v5.14-mpdl-3
User: testuser1
Result: OK

helkv added a commit that referenced this issue Jul 2, 2024
@helkv
#61 Fix location of prettyprint.xsl + Add some Unit Tests
d257906 
- Fix after v6.2 Merge: Move prettyprint.xsl to the correct folder (otherwise prettyPrintXML method doesn't work and FundingReferences are not send to Datacite)
- Add some Unit Tests for DataCiteMetadataUtil
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Extend the metadata information sent to DataCite, by adding fundingReferences MPDL/dataverse
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@haarli @helkv @yvgrossmann