Updated Phenotype data (markdown)
Updated Upload to Bristol SFTP (markdown)
Updated Install and set up (markdown)
Edited to reflect removal of batch variables from study specific vars and addition to test association with SVs
Updated System requirements (markdown)
Updated Process genetic data (markdown)
Updated GWAS genetic PCs (markdown)
add instructions for ./check_upload.sh -c /path/to/config/file 01 upload manual
Updated VCF and bfile sample IDs mismatch (markdown)
Created VCF and bfile sample IDs mismatch (markdown)
Updated Frequently Asked Questions (markdown)
Updated Covariate data for mQTLs (markdown)
Updated Run variance meQTL analysis (markdown)
Updated Compute haplotype components (markdown)
pending for 01g
Updated Cross‐cohort normalisation of methylation data (markdown)