Unable to generate Phase Tensor Plot #139
Comments
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Hi Roshan, @roshanmanjitsingh Thank you for your enquiry. I will pass the issue to @alkirkby to have a look. |
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Hi @roshanmanjitsingh, I can't seem to reproduce your error. Are you adding 0.000000E+0 to all of the Z fields? |
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Dear
Thanks for your reply. Please find the attached EDI file and the script
that I have been using.
I have also applied the changes suggested by you but it doesn't work.
Thanks
Best regards
Roshan Kumar Singh
DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany)
Ph.D. Applied Geophysics
Department of Applied Geophysics
Indian Institute Of Technology (ISM) Dhanbad, 826004
…On Tue, Mar 23, 2021 at 10:04 AM Alison Kirkby ***@***.***> wrote:
Hi @roshanmanjitsingh <https://github.com/roshanmanjitsingh>, I can't
seem to reproduce your error. Are you adding 0.000000E+0 to all of the Z
fields?
You could try using a no-data-value of 1.000000e+32 and setting
EMPTY=1.0e+32 in the header. Alternatively, if you could provide your code
and edi files I can look into it for you.
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I can't see the files. Can you zip them up and email them to me? |
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Dear Alison
Please find the attached edi file and script.
Thanks and regards
Roshan Kumar Singh
DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany)
Ph.D. Applied Geophysics
Department of Applied Geophysics
Indian Institute Of Technology (ISM) Dhanbad, 826004
…On Wed, Mar 24, 2021 at 4:24 AM Alison Kirkby ***@***.***> wrote:
I can't see the files. Can you zip them up and email them to me?
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OK it's not a problem with the edi files it's the script. If you run: from mtpy.core import mt edi_file = 'path/to/edifile' mt_obj = mt.MT(edi_file) It should work. I get a plot like this: |
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Dear Alison
I have tried running using your script. I am still facing the same problem.
Please find the following attached files for the script being used by me
and the associated error :
*Script_and_Error1:* Scripts as suggested by you and the error associated
*Script_and_Error2:* Scripts initially used by me and the error associated
Thanks and regards
Roshan Kumar Singh
DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany)
Ph.D. Applied Geophysics
Department of Applied Geophysics
Indian Institute Of Technology (ISM) Dhanbad, 826004
…On Wed, Mar 24, 2021 at 6:19 AM Alison Kirkby ***@***.***> wrote:
OK it's not a problem with the edi files it's the script. If you run:
from mtpy.core import mt
edi_file = 'path/to/edifile'
mt_obj = mt.MT(edi_file)
pt_obj = mt_obj.plot_mt_response(plot_yn='n')
pt_obj.plot()
It should work. I get a plot like this:
[image: image]
<https://user-images.githubusercontent.com/5335745/112237470-da46fb00-8c96-11eb-93a2-6d5022bbf9bc.png>
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Dear Alison
I was wandering that the error may be due to any older version of MTpy
being used by me.
Thanks and regards
Roshan K Singh
On Wed, 24 Mar 2021, 06:59 Roshan manjit Singh, ***@***.***>
wrote:
… Dear Alison
I have tried running using your script. I am still facing the same problem.
Please find the following attached files for the script being used by me
and the associated error :
*Script_and_Error1:* Scripts as suggested by you and the error associated
*Script_and_Error2:* Scripts initially used by me and the error
associated
Thanks and regards
Roshan Kumar Singh
DAAD Alumnus, 2018-19, (GFZ, Potsdam, Germany)
Ph.D. Applied Geophysics
Department of Applied Geophysics
Indian Institute Of Technology (ISM) Dhanbad, 826004
On Wed, Mar 24, 2021 at 6:19 AM Alison Kirkby ***@***.***>
wrote:
> OK it's not a problem with the edi files it's the script. If you run:
>
> from mtpy.core import mt
>
> edi_file = 'path/to/edifile'
>
> mt_obj = mt.MT(edi_file)
> pt_obj = mt_obj.plot_mt_response(plot_yn='n')
> pt_obj.plot()
>
> It should work. I get a plot like this:
> [image: image]
> <https://user-images.githubusercontent.com/5335745/112237470-da46fb00-8c96-11eb-93a2-6d5022bbf9bc.png>
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <#139 (comment)>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/ASUZUYBBPOP77NDCP6RC6B3TFEZKXANCNFSM4ZIUW7MA>
> .
>
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quite possibly, it is definitely worth pulling the latest version, let me know how you go. |
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Dear Alison
I have downloaded the MTpy using the following link
https://github.com/MTgeophysics/mtpy/wiki/MTPy-installation-guide-for-Windows-10-and-Ubuntu-18.04
If possible can you please provide me link to download the latest version
or the version that you use.
Thanks and regards
Roshan
…On Thu, 25 Mar 2021, 07:38 Alison Kirkby, ***@***.***> wrote:
quite possibly, it is definitely worth pulling the latest version, let me
know how you go.
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Following those instructions should get you the latest version. If you navigate to the path where mtpy is installed (e.g. /c/mtpywin/mtpy), make sure the develop branch is checked out, and run git pull, you should have the latest version. |
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Dear Alison
I have followed your instructions . The MTpy version which I have been
using is up to date
Roshan Kumar Singh
…On Thu, Mar 25, 2021 at 8:31 AM Alison Kirkby ***@***.***> wrote:
Following those instructions should get you the latest version. If you
navigate to the path where mtpy is installed (e.g. /c/mtpywin/mtpy), make
sure the develop branch is checked out, and run git pull, you should have
the latest version.
If you used pip install mtpy that version is out of date.
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Hmm |
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Dear Alison
I am running on Jupiter Notebook.
I have matplotlib=3.3.4.
Regards
Roshan
…On Fri, 26 Mar 2021, 02:41 Alison Kirkby, ***@***.***> wrote:
Hmm
It's really hard to debug as I can't reproduce the error, it works fine
for me. How are you running the script (e.g. jupyter notebook, spyder, or
commandline)? and what version of matplotlib are you using?
I have matplotlib=3.2.1 (you can get a list of installed packages and
versions by running pip freeze)
and I am running it in spyder
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I'm running out of suggestions I'm sorry, @zhang01GA do you have any ideas?
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Dear Alison
For the edi file without any empty entries I have been able to generate the
phase tensor plots. It is only with the edi files having some empty entries
i am facing difficulties.
Which python version you have?
The python version that I am using is 3.7.1.
Best regards
Roshan
…On Fri, 26 Mar 2021, 09:07 Alison Kirkby, ***@***.***> wrote:
I'm running out of suggestions I'm sorry, @zhang01GA
<https://github.com/zhang01GA> do you have any ideas?
The only other things I can suggest are:
- make sure you have the mtpy environment active in Anaconda
- if that doesn't help try running it as a script directly in a
command prompt (ensuring the mtpy environment is active)
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@alkirkby @roshanmanjitsingh , we have a new developer @snazzybloke (Ante Bilic) who can start looking into this problem. I will provide assistance as required |
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Thank you Fei for having @snazzybloke <https://github.com/snazzybloke>
(Ante Bilic) to look into the problem.
…On Tue, 30 Mar 2021, 04:27 Fei Zhang, ***@***.***> wrote:
@alkirkby <https://github.com/alkirkby> @roshanmanjitsingh
<https://github.com/roshanmanjitsingh> , we have a new developer
@snazzybloke <https://github.com/snazzybloke> (Ante Bilic) who can start
looking into this problem. I will provide assistance as required
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Hi @roshanmanjitsingh, |
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Dear @snazzybloke <https://github.com/snazzybloke>
Please find the attached files.
On Tue, Mar 30, 2021 at 11:59 AM Ante Bilic ***@***.***> wrote:
Hi @roshanmanjitsingh <https://github.com/roshanmanjitsingh>,
I would need to know your whole environment to reproduce and investigate
the issue.
Would you be able share your package versions?
(try perhaps pip freeze > requriements.txt)
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.
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nest-asyncio=1.5.1=pyhd3eb1b0_0
netcdf4=1.4.2=py37h812ae01_0
notebook=6.2.0=py37haa95532_0
numpy=1.19.2=py37hadc3359_0
numpy-base=1.19.2=py37ha3acd2a_0
numpydoc=1.1.0=pyhd3eb1b0_1
obspy=1.2.2=pypi_0
openjpeg=2.3.0=h5ec785f_1
openssl=1.1.1k=h2bbff1b_0
packaging=20.9=pyhd3eb1b0_0
pandas=1.2.3=py37hf11a4ad_0
pandoc=2.11=h9490d1a_0
pandocfilters=1.4.3=py37haa95532_1
parso=0.8.1=pyhd3eb1b0_0
pcre=8.44=ha925a31_0
pickleshare=0.7.5=pyhd3eb1b0_1003
pillow=8.1.1=pypi_0
pip=21.0.1=py37haa95532_0
postgresql=11.2=h3235a2c_0
proj=6.2.1=h9f7ef89_0
prometheus_client=0.9.0=pyhd3eb1b0_0
prompt-toolkit=3.0.8=py_0
psutil=5.8.0=py37h2bbff1b_1
pycodestyle=2.7.0=pyhd3eb1b0_0
pycparser=2.20=py_2
pyflakes=2.3.0=pyhd3eb1b0_0
pygments=2.8.0=pyhd3eb1b0_0
pylint=2.7.2=py37haa95532_1
pyopenssl=20.0.1=pyhd3eb1b0_1
pyparsing=2.4.7=pyhd3eb1b0_0
pyproj=2.6.1.post1=py37h593ac45_1
pyqt=5.9.2=py37h6538335_2
pyrsistent=0.17.3=py37he774522_0
pysocks=1.7.1=py37_1
python=3.7.10=h6244533_0
python-dateutil=2.8.1=pyhd3eb1b0_0
pytz=2021.1=pyhd3eb1b0_0
pywin32=227=py37he774522_1
pywin32-ctypes=0.2.0=py37_1001
pywinpty=0.5.7=py37_0
pyyaml=5.4.1=py37h2bbff1b_1
pyzmq=20.0.0=py37hd77b12b_1
qt=5.9.7=vc14h73c81de_0
qtawesome=1.0.2=pyhd3eb1b0_0
qtconsole=5.0.2=pyhd3eb1b0_0
qtpy=1.9.0=py_0
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rope=0.18.0=py_0
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scipy=1.6.1=pypi_0
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setuptools=52.0.0=py37haa95532_0
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six=1.15.0=py37haa95532_0
snowballstemmer=2.1.0=pyhd3eb1b0_0
sphinx=3.5.3=pyhd3eb1b0_0
sphinxcontrib-applehelp=1.0.2=pyhd3eb1b0_0
sphinxcontrib-devhelp=1.0.2=pyhd3eb1b0_0
sphinxcontrib-htmlhelp=1.0.3=pyhd3eb1b0_0
sphinxcontrib-jsmath=1.0.1=pyhd3eb1b0_0
sphinxcontrib-qthelp=1.0.3=pyhd3eb1b0_0
sphinxcontrib-serializinghtml=1.1.4=pyhd3eb1b0_0
spyder=3.3.6=py37_0
spyder-kernels=0.5.2=py37_0
sqlalchemy=1.3.23=pypi_0
sqlite=3.33.0=h2a8f88b_0
tbb=2018.0.5=he980bc4_0
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tk=8.6.10=he774522_0
toml=0.10.2=pyhd3eb1b0_0
tornado=6.1=py37h2bbff1b_0
traitlets=5.0.5=pyhd3eb1b0_0
typed-ast=1.4.2=py37h2bbff1b_1
urllib3=1.26.3=pypi_0
vc=14.2=h21ff451_1
vs2015_runtime=14.27.29016=h5e58377_2
wcwidth=0.2.5=py_0
webencodings=0.5.1=py37_1
wheel=0.36.2=pyhd3eb1b0_0
win_inet_pton=1.1.0=py37haa95532_0
wincertstore=0.2=py37_0
winpty=0.4.3=4
wrapt=1.12.1=py37he774522_1
xerces-c=3.2.3=ha925a31_0
xz=5.2.5=h62dcd97_0
yaml=0.2.5=he774522_0
zeromq=4.3.3=ha925a31_3
zipp=3.4.0=pyhd3eb1b0_0
zlib=1.2.11=h62dcd97_4
zstd=1.3.7=h508b16e_0
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I've run into the same errors as you by running Alison's script shown above. So, as a quick fix I suggest that you set up the virtual environment for mtpy to use the 3.2.1 matplotlib ver. Ante |
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@roshanmanjitsingh, further to my comment above, even with the newer matplotlib version you should still be able to produce the plots simply by running your script from the command line, e.g.: The error I see is between IPython and new matplotlib, which makes it impossible for either spyder or jupyter to render the plot object (since they both rely on IPython directly and/or via ipykernel). |
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Dear @snazzybloke <https://github.com/snazzybloke>
Thanks for giving time to my problem. I will try to follow your
recommendation and then get back to you
…On Sun, Apr 4, 2021 at 2:32 PM Ante Bilic ***@***.***> wrote:
@roshanmanjitsingh <https://github.com/roshanmanjitsingh>, further to my
comment above, even with the newer matplotlib version you should still be
able to produce the plots simply by running your script from the command
line, e.g.:
*> python script_name.py*
The error I see is between IPython and new matplotlib, which makes it
impossible for either spyder or jupyter to render the plot object (since
they both rely on IPython directly and/or via ipykernel).
—
You are receiving this because you were mentioned.
Reply to this email directly, view it on GitHub
<#139 (comment)>,
or unsubscribe
<https://github.com/notifications/unsubscribe-auth/ASUZUYEE7ET4AWYSQPNSVFDTHATJTANCNFSM4ZIUW7MA>
.
|
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Dear @snazzybloke <https://github.com/snazzybloke>
I tried running the script using your recommendation and it executed
successfully.
Thank you very much. Thanks to all.
Roshan Kumar Singh
On Mon, Apr 5, 2021 at 1:29 AM Roshan manjit Singh <
***@***.***> wrote:
… Dear @snazzybloke <https://github.com/snazzybloke>
Thanks for giving time to my problem. I will try to follow your
recommendation and then get back to you
On Sun, Apr 4, 2021 at 2:32 PM Ante Bilic ***@***.***>
wrote:
> @roshanmanjitsingh <https://github.com/roshanmanjitsingh>, further to my
> comment above, even with the newer matplotlib version you should still be
> able to produce the plots simply by running your script from the command
> line, e.g.:
> *> python script_name.py*
>
> The error I see is between IPython and new matplotlib, which makes it
> impossible for either spyder or jupyter to render the plot object (since
> they both rely on IPython directly and/or via ipykernel).
>
> —
> You are receiving this because you were mentioned.
> Reply to this email directly, view it on GitHub
> <#139 (comment)>,
> or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/ASUZUYEE7ET4AWYSQPNSVFDTHATJTANCNFSM4ZIUW7MA>
> .
>
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I have an MT data file where the entries are in column format.
I have converted it into EDI format.
For some frequencies, I do have only the tipper data and not the impedance data
and vice versa.
In the EDI file, I am adding "0.000000E+0" for the component whose value is missing.
For example, corresponding to the frequency "2.441406E-05" I don't have the Z information so in the EDI file, I am adding "0.000000E+0" for all the Z components whereas for tipper I am giving the measured value.
In such cases, I am unable to generate the phase tensor plots for the respective sites.
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