How can I find the "invert_it.pl" wrpper script?

[Ashar14]

I would like to generate the file for the inverted repeats. From the 2013 method puplication, you mentioned the "The wrapper script ‘invert_it.pl’ (Table 2), provided with the Short- Stack tutorial [12], can accomplish all of this."

Bt I could not find the ‘invert_it.pl’ script formt he reference mentioned in abaove publication.

Could you please provide the script.

Thanks

[MikeAxtell]

Hello, The 2013 paper is quite out of date and the current version of ShortStack does not use input files of inverted repeats. All of the older versions, even super-ancient ones, are on gihub, but I strongly encourage you to use the most recent release. Thanks, Mike

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On Mon, Jul 9, 2018 at 8:51 AM Ashar14 ***@***.***> wrote: I would like to generate the file for the inverted repeats. From the 2013 method puplication, you mentioned the "The wrapper script ‘invert_it.pl’ (Table 2), provided with the Short- Stack tutorial [12], can accomplish all of this." Bt I could not find the ‘invert_it.pl’ script formt he reference mentioned in abaove publication. Could you please provide the script. Thanks — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#78>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGiXiW-wKXnjricEDgzdIBzA3ep36egiks5uE1HIgaJpZM4VHpkt> .

-- Michael J. Axtell, Ph.D. Professor of Biology Penn State University http://sites.psu.edu/axtell

[Ashar14]

hi,
Thank you very much. I will use the recent one. If I understood correctly, you mean that with the new version it is no more necessary to use inv files, right?

[MikeAxtell]

Correct.

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On Mon, Jul 9, 2018 at 9:00 AM Ashar14 ***@***.***> wrote: hi, Thank you very much. I will use the recent one. If I understood correctly, you mean that with the new version it is no more necessary to use inv files, right? — You are receiving this because you commented. Reply to this email directly, view it on GitHub, or mute the thread.

-- Michael J. Axtell, Ph.D. Professor of Biology Penn State University http://sites.psu.edu/axtell