GitHub - ModelDBRepository/263193: Cooling reverses pathological spontaneous firing caused by mild traumatic injury (Barlow et al 2018)

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Cooling reverses pathological spontaneous firing caused by mild traumatic injury (Barlow et al 2018)

modeldb.science/263193

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
images		images
CoupledLeftShift_and_Temperature.py		CoupledLeftShift_and_Temperature.py
clsT.mod		clsT.mod
example_Fig2a.py		example_Fig2a.py
readme.html		readme.html

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<html>
<p>This is the readme for the models associated with the paper:
</p>
<p>Barlow BM, Joos B, Trinh AK, Longtin A (2018) Cooling reverses pathological bifurcations to spontaneous firing caused by mild traumatic injury. Chaos 28:106328
<a href="http://dx.doi.org/10.1063/1.5040288">http://dx.doi.org/10.1063/1.5040288</a>
</p>
<p>This archive was contributed by B Barlow. It requires the NEURON simulator and
works under mac, linux, and mswin.
</p>
<p>To run the model, extract this archive and then depending on your platform:
</p>
<p>mac, linux/unix:<br/>
  ----------------
</p>

type at the terminal prompt

<p>python3 example_Fig2a.py
</p>
mswin<br/>
-----
<p>Using the spyder app in the IPython console type<p/>
import example_Fig2a
</p>
<p>The figures will appear in a Plots pane.
</p>
<hr/>
The following figures will be generated (you can close one to see the next) which correspond to Figure 2a in the paper in the order of the middle, top, and then bottom traces:

<p><img src="./images/screenshot1.png" alt="screenshot 1"></p>
<p><img src="./images/screenshot2.png" alt="screenshot 2"></p>
<p><img src="./images/screenshot3.png" alt="screenshot 3"></p>

<p/>
<pre>
Operating systems versions tested:
macOS Mojave 10.14.6
linux Ubuntu 18.04.4 LTS bionic
mswin Windows 10 Pro Version 1909 OS build 18363.720 Spyder 4.0.1

NEURON version 7.7.2 on mac and mswin, 7.8.0-99-gda5790d7 on linux
</pre>
</html>