A. Software Dependencies

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Liz edited this page Aug 5, 2015 · 4 revisions

Tested on:

Amazon EC2 m4.4xlarge
Ubuntu 14.04.2 LTS
- BWA 0.7.12-r1039
- HISAT 0.1.6-beta
- STAR 2.4.0j
- blast+ 2.2.32
- samtools 0.1.19-44428cd
- fastq-dump 2.5.2
R 3.2.1
- Bioconductor 3.1
- csaw 1.2.1
- edgeR
- TxDb.Hsapiens.UCSC.hg38.knownGene
- org.Hs.eg.db
Python 2.7.8