…h GFS v16 real-time parallel config.base

output cloud ceiling height and instant total cloud fraction.
output instant cloud fraction at low/mid/high cloud layer.
correct grib2 names of time averaged cloud fraction fraction at low/mid/high cloud layer from "TCDC" into "LCDC, MCDC, HCDC".
output radar reflectivity at 1/4 km above ground and model layer 1/2.
output mixed layer CAPE/CIN.
Remove simulated GOES-12 brightness temperature from gfs product.
Add the bug fix of initializing DBZI from Ruiyu.

Removing obsolete nm variable entries

…post

Adapting wavepostsbs for running on Hera

…chgresfcst

…on type o short.

modified:   sorc/checkout.sh  updated to model tag GFS.v16.0.6 to fix contrib issue on HERA

…0.6 tag

…v1.0.8. 1.0.9 still has issues.

…fault for running the real-time parallel

…es variables to env

…fsv16b

Generalize setting of echgres threads to be maximum permitted on given platform instead of explicitly setting echgres threads on every platform.

…ckout.sh

…ix_externals

Update version of upp in Externals.cfg to be consistent with sorc/che…

…FS.v16.0.7

   and UPP tag upp_gfsv16_release.v1.0.9.  Changes include:

1) Inline POST Issues NOAA-EMC#136 and $142
   * Update ceiling height calculation for global FV3.
   * add low,middle,high instantaneous cloud fraction
   * add radar reflectivity at model layers 1 and 2 , and radar reflectivities at 1 and 4-km height.
   * fix a bug in initializing DBZI
   * output mixed layer CAPE/CIN
   * remove simulated GOES-12 brightness temperature.
   * change the names of time averaged low/mid/high cloud fractions in grib2 files
     from "TCDC" to "LCDC/MCDC/HCDC", respectively.

2) Model Issue NOAA-EMC#152
   * update in-line post control files
   * upgrade post library to 8.0.9 for hera and wcoss_dell_p3

Remove use/mention of manage_externals until checkout.sh is retired.

…workflow into feature/gfsv16b

fix for exiting properly with error for wave prep/init scripts

 * replace enkf member atmi*nc with ratmi*nc in HPSS enkf tarballs

 * add ensemble resolution analysis to HPSS gdas tarball

 * allow variable range to be externally set in run_gfsmos_master scripts

       export COMROOTp1="/scratch1/NCEPDEV/global/glopara/com"
       export COMINsyn=${COMINsyn:-${COMROOTp1}/gfs/prod/syndat}

-     echo  "${dirname}${head}atma000.ensres${SUFFIX}  " >>gdas.txt
+     echo  "${dirname}${head}atma009.ensres${SUFFIX}  " >>gdas.txt

    elif [ $machine = "HERA" ] ; then
        export RUNGFSMOSSH="$HOMEgfs/scripts/run_gfsmos_master.sh.hera"

- change 'nco' mode to 'prod' mode
- change 'emc' mode to 'dev' mode
- update machine values to match target names

…bal_fcst_nemsfv3gfs.sh

    add WW3 break-point restart capability and clean up forecast script.

…tory for gdas cycle as well

…workflow into feature/gfsv16b_restart

modified:   exglobal_fcst_nemsfv3gfs.sh etc to enable WW3 break-point restart capability

…gfsv16b-restructure

 1.   WW3 update: write all restart files in a sub-directory restart_wave
 2.   Port production/GFS.v16 to Orion (NOAA-EMC#129)
    * Update FV3 submodule
    * Update NEMS submodule
    * Add 'ulimit -s unlimited' to Orion job card template
    * Update NEMS submodule to point to fix_moduleinit branch in 'junwang-noaa/NEMS'
    * Update modulefiles/orion.intel/fv3
    * Update regression test configuration on Orion (for gfs_v16)
    * Update NEMS submodule (change /apps/lmod/init path after Orion maintenance)
    * Update NEMS submodule (point to NOAA-EMC/NEMS)

…back

…s.sh

            UPP tag tag upp_gfsv16_release.v1.0.10  and model tag GFS.v16.0.10
            Updated the algorithm used to compute CAPE and CIN in UPP.  The computation
            is now bounded from the surface up to 1 hPa instead of the model top to
            avoid producing erroneous large CAPE and CIN values.

…ory_atmos

…tcdfhistory_atmos"

This reverts commit 4977271.

…en Earle, also renamed the wave scripts to match the correct convention

…gfsv16b-restructure

…N[COMOUT]atmos[wave] instead

… breakpoint restarting

…PP tag

…gfsv16b-restructure

…dback

…nother branch, needs more testing

…gfsv16b-restructure

…sks disabled and set new path to restructured gfsmos

…authoritative repos ahead of their updating for new , will update EMC_gfs_wafs to new tag when available

…ils.sh to link_fv3gfs.sh based on feedback from GEFS team

…s.sh

…eckout with EMC_post

…d EnvVars

… for post P1/P2 removal

…gfsv16b-restructure

…cast mode

…ture

GFSv16 restructure for new $COMPONENT subfolder