Feature/linux target #2

dshawul · 2020-06-11T18:58:58Z

Added docker capability for gfs as an external repo.
Updated linux-target repository to latest gfsv16b.

…h GFS v16 real-time parallel config.base

Feature/gfsv16b wave

@ajhenrique

* Pointing to v3.1 tag for ufs-s2s-model making readme consistant with user.yaml.default * bug fix, POSTGRB2TBL undefined * Squashing commits to wave2global * Fix to JWAVE_PREP to look back a day for rtofs * Moving standalone fv3 model_config exglobal_fcst block into if/else/fi cplwav model_config block. Reinstating config.wave block in JGLOBAL_FORECAST. Pointing EXECwave to HOMEgfs/exec directory for WW3 util executables (changed link_fv3gfs.sh accordingly). Removing debug options from compile.sh line in build_fv3.sh. * Clean up exwave_post_sbs * clean up unused schema move default value into defaults/ * move all default values into /defaults from /schema It's better if we have one place to manage default values for configurable variables other than two Default values only for reference. Please throughly test to make sure it could reproduce. * model_configure_DATM * merge in the latest revision from IPD work * add stoch variables to config.fcst scripts update: CCPP and IPD works * capital case CDUMP values in config.fv3 * stochy variable namelist update, add hard-coded variables into config.fcst (fcst.yaml) * OCNTIM and ICETIM are included in config.fv3 ice variable istep0 bug fix * stochastic variables update * delete falseful copy after namelist and model_configure parsing add FNMSKH conditional clause, coupled vs non-coupled * update on sandbox platform, for FIX_SCRUB settings * turn off stochastic features in case file * configuration update for CCPP scripts * generalize fix file directory for imp_physics 8 * reiflag default value changed to 1 * port to Orion * remove HERA-like paths in platform.yaml of Orion * checkout and External.cfg update * update checkout and External.cfg * case file adjustment for Orion IC * expand gitignore * automate fix file linking, to this location: /work/noaa/marine/jmeixner/tempFixICdir/fix/fix_prep_benchmark3 * updates to checkout, build and link to run prototype 4 * update UPP version to v1.0.8 * making Externals_coupled.cfg consistent with checkout.sh * removing fix from .gitignore * fixed error when linking on hera * replace MOM6IC with BASE_CPLIC for base directory location of IC for s2s model and made it platform dependent. (Orion location is temporary and needs to be replaced, can also be changed in cases/coupled_free_forecast.yaml to users prefered location) * updates for copying ICs * more updates for ICs * updates for new fix (which includes prep for multiple resolutions) and some clean-up * renaming exe to reflect updated build * update diag_table for ocean * updates for ice_in to match prototype 4 * updates for CCPP suite used in p4 * making a fix dir of all available ccpp suite files copying suite xml file to rundirectory * updating for reorganized tar files, pulling in changes from wcoss-p2 workflow * last of archive updates for p4 * updating module files to match s2s model and ncep post modules * we don't want to cycle/have 4 runs per day so setting the cases to be just 1 IC * updating module files on hera * updates to readme for orion * mediator cold start succeeds on hera and forecast job starts post jobs for atmosphere are no longer triggered on cold starts * adding ncks, updating ocean post, some fixes for tar files * updates for tar files and do not keep data * fix typo * updating module_base.orion that allows cold start to run. Not sure if other jobs will now fail though or if what is in your .bashrc file will effect the success/failure of the run. * both forecast and atm post seem to be running okay on orion * wave configuration files * wave configuration update * fix module-setup.sh.inc script, which causes module purge unsuccessful * 1, Moved some of the variables into configuration system from JWAVE scripts 2, Wave configuration system built out 3, Modularized scripts updated to accomodate wave variables * Fix suite name of CCPP Move cplwav and cplwav2atm variable * Revise CCPP_SUITE variable name, default option, to "IPD" * wave post-process job update * reg2grb2 for test on feature coupled-crow * orion hera build test * reg2grb2 Build on Hera and Orion * Merged and ready for test * add ocn-ice build to readme * adding updates to wave scripts from gfsv16b branch by @ajhenrique * cleaning up double cplwav * changes to wave case * bugfix in layout file * bug fix in layout file * move OCNPETS, ICEPETS and WAVEPETS into dedicated model-specific sessions instead of fv3_gfs_settings * first try for adding wave ICs * fix bugs in config.wave and coupled_ic.sh * updates for wave defaults for s2s p4 * updates for running wave jobs * point WW3-related executables through HOMEgfs/fv3_coupled.fd/exec * ocean post hours at boundary are processed twice, now fixed. * wave init job now works on hera * adding missing file from last commit * add ocean, ice and wave configurable variables * add ocean, ice and wave configurable variables * put ic type variable into config.fv3ic * wave init now works on orion * updates to run wave prep for s2s case * updating forecast job for wave jobs * updates for forecast with waves * at this point the ocean post is now running * fix nems.configure for cold start * updated wave-realted scripts to match gfsv16 branch updated environment files env/ORION.env updated configuration system * S2s prototype4 (NOAA-GSL#2) * add waves to jglobal forecast config * updates - everything but wave post seems to run now, part of wave post does updating model to latest tag * change for lmod -> lmod/lmod on orion updated README * fixing syntax error in JWAVE_PREP job for variables that are not actively being used * adding cycle definition to wave post job * cleanup from duplications Co-authored-by: Jessica.Meixner <Jessica.Meixner@noaa.gov> Co-authored-by: Henrique Alves <henrique.alves@noaa.gov> Co-authored-by: kate.friedman <kate.friedman@noaa.gov> Co-authored-by: Jose-Henrique Alves <47567389+ajhenrique@users.noreply.github.com> Co-authored-by: Lin.Gan <lin.gan@noaa.gov>

Squashed commit of the following: commit 0e0dc87 Merge: b133700 95a6343 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 10:54:44 2020 -0400 Merge pull request NOAA-GSL#42 from NOAA-EMC/hotfix/viewer Issue NOAA-GSL#41 - Update PRODUTIL paths for WCOSS in viewer commit 95a6343 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 14:43:44 2020 +0000 Issue NOAA-GSL#41 - Update PRODUTIL paths for WCOSS in viewer commit b133700 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 26 13:01:38 2020 +0000 Issue NOAA-GSL#21 - correct syntax for machine if-blocks in setup_expt scripts commit f4ee509 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 20:52:49 2020 +0000 Issue NOAA-GSL#21 - remove unneeded logic from partition check commit 4acc80f Merge: accb6f4 fb1c79f Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Wed Mar 25 15:22:51 2020 -0400 Merge pull request NOAA-GSL#40 from NOAA-EMC/port2wcoss3p5 Issue NOAA-GSL#21 - Add support for WCOSS phase 3.5 commit fb1c79f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 16:06:54 2020 +0000 Issue NOAA-GSL#21 - updated WCOSS phase 3.5 queues commit 08a5354 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Mar 25 14:58:14 2020 +0000 Issue NOAA-GSL#21 - add phase 3.5 support - add partition option to setup scripts - remove machine if-blocks from config.base and add variable population to setup_expt*py scripts - add phase 3.5 ppn value to WCOSS_DELL_P3 env and config.resources files commit accb6f4 Merge: 057b2a8 8b51b56 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 14:01:30 2020 -0400 Merge pull request NOAA-GSL#39 from NOAA-EMC/feature/verif-tag Issue NOAA-GSL#38 - update EMC_verif-global pointer from VLab to GitHub commit 8b51b56 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Mar 23 17:40:18 2020 +0000 Issue NOAA-GSL#38 - update EMC_verif-global pointer from VLab to GitHub commit 057b2a8 Merge: 0377d20 622167d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 11 12:00:58 2020 -0400 Merge pull request NOAA-GSL#29 from NOAA-EMC/feature/manage_externals Issue NOAA-GSL#3 - Introduce manage_externals as replacement for checkout.sh commit 622167d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 18:20:31 2020 +0000 Issue NOAA-GSL#3 - added explicit config flag example for checkout_externals in README and blurb about this replacing checkout.sh commit e83b90d Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 17:00:15 2020 +0000 Issue NOAA-GSL#3 - remove prod_util and grib_util sections from build_all.sh, removed elsewhere already commit 8699b46 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:30:54 2020 +0000 Issue NOAA-GSL#3 - updated README with new manic version commit e602cd3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 16:27:57 2020 +0000 Issue NOAA-GSL#3 - updated link_fv3gfs.sh to adjust wafs links commit 830c73f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:21:45 2020 +0000 Issue NOAA-GSL#3 - update EMC_verif-global tag in Externals.cfg after sync with develop commit 40084e6 Merge: f662fff 0377d20 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Mar 6 15:18:52 2020 +0000 Issue NOAA-GSL#3 - Merge branch 'develop' into feature/manage_externals commit 0377d20 Merge: 1b359db 2552467 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 08:43:16 2020 -0500 Merge pull request NOAA-GSL#28 from NOAA-EMC/feature/metplus2 Issue NOAA-GSL#8 - add switch for MET+ jobs commit 2552467 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Mar 5 13:31:02 2020 +0000 Issue NOAA-GSL#8 - add switch for MET+ jobs commit 1b359db Merge: 0359d34 31bb7d3 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Mar 4 10:19:36 2020 -0500 Merge pull request NOAA-GSL#26 from NOAA-EMC/feature/metplus Feature/metplus - refactored MET+ jobs to resolve timing issues commit 31bb7d3 Merge: eb73e52 0359d34 Author: Mallory Row <mallory.row@noaa.gov> Date: Wed Feb 19 15:24:42 2020 +0000 Merge branch 'develop' into feature/metplus commit f662fff Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Feb 14 15:57:05 2020 +0000 Issue NOAA-GSL#3 - Updated README with new manic tag v1.1.7 commit e3196a8 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 13 15:59:06 2020 -0500 Update README.md commit e46b175 Merge: 4bd0e20 0359d34 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 13 20:38:04 2020 +0000 Issue NOAA-GSL#3 - sync merge with develop branch commit 0359d34 Merge: 1d9a1f0 bd00cb9 Author: Hang-Lei-NOAA <44901908+Hang-Lei-NOAA@users.noreply.github.com> Date: Thu Feb 13 09:53:59 2020 -0500 Merge pull request NOAA-GSL#19 from NOAA-EMC/feature/remove_theia Feature/remove theia commit eb73e52 Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Feb 7 14:04:37 2020 +0000 Update EMC_verif-global checkout to verif_global_v1.5.0 commit bd00cb9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:41:05 2020 +0000 Issue NOAA-GSL#4 - bug fix in getic.sh for v15 commit 1c85197 Merge: 67dae40 1d9a1f0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Fri Feb 7 13:27:18 2020 +0000 Issue # 4 - Sync merge branch 'develop' into feature/remove_theia commit 1d9a1f0 Merge: 3ed9267 bdbecaa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Feb 7 08:11:21 2020 -0500 Merge pull request NOAA-GSL#18 from lgannoaa/exception_handling Exception handling commit 4bd0e20 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Feb 6 11:55:31 2020 -0500 Update README.md commit d9ea1ac Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Feb 6 16:03:11 2020 +0000 Issue NOAA-GSL#3 - reduce hashes down to minimum 8 characters commit bdbecaa Author: Lin.Gan <lin.gan@noaa.gov> Date: Wed Jan 29 15:15:52 2020 +0000 Display exception handling message for individual package with location of the log file commit b64fd5f Merge: cf00863 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:24:37 2020 +0000 Merge branch 'develop' into feature/manage_externals commit cf00863 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 28 15:23:14 2020 +0000 Issue NOAA-GSL#3 - remove copy of manage_externals under util and add README.md file commit c12e879 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Jan 27 19:38:19 2020 +0000 Implement exception handling in build_all script commit bfc7bb0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Jan 27 19:06:17 2020 +0000 Issue NOAA-GSL#3 - initial add of manage_externals and needed Externals.cfg. Also added .gitignore file and removed scripts/files associated with no-longer-used prod_util and grid_util builds. commit 4d5713d Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 15:51:28 2020 +0000 Testing github commit commit 786806f Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 15:04:16 2020 +0000 Missed file format updates in a few places in config.metp commit d0a3b53 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Jan 24 14:30:29 2020 +0000 init commit for exception handling branch commit c11dfef Author: Mallory Row <mallory.row@noaa.gov> Date: Fri Jan 24 14:07:29 2020 +0000 Update EMC_verif-global tag to verif_global_v1.4.1 commit 0ea809c Author: Mallory Row <mallory.row@noaa.gov> Date: Thu Jan 23 13:29:56 2020 +0000 Update file format variable in config.metp of online archive files commit c0d7179 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:37:16 2020 +0000 Add updated env machine files for gfsmetp commit 82e6907 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:29:23 2020 +0000 Update config.resources for gfsmetp commit 72e8adf Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:19:31 2020 +0000 Update EMC_verif-global tag checkout to 1.4.0 commit 6872f79 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:14:25 2020 +0000 Add rocoto METplus job script commit 9c94156 Author: Mallory Row <mallory.row@noaa.gov> Date: Tue Jan 21 16:09:13 2020 +0000 Changes to setup_workflow.py for gfsmetp metatask commit 3ed9267 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 14 19:32:36 2020 +0000 Issue NOAA-GSL#10 - mid-year update to bufr station list (develop) commit 1915aa9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 10 18:36:32 2020 +0000 Issue NOAA-GSL#8 - pulled in config.metp and modifications to two setup scripts commit 67dae40 Merge: f78eb1b 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:15:45 2020 +0000 Merge branch 'develop' into feature/remove_theia commit f78eb1b Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 20:13:08 2020 +0000 Issue NOAA-GSL#4 - removed references to Theia and Theia scripts commit 091f4ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Jan 8 19:37:45 2020 +0000 Issue NOAA-GSL#7 - missed update to gdas transfer file from GFSv15.2.5 updates commit 3fd4bcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 17 19:12:28 2019 +0000 GitHub Issue NOAA-GSL#2 - GFSv15.2.6 obsproc version update, earc bug fix, and tracker path update commit 5307952 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Dec 11 20:47:44 2019 +0000 HOTFIX - VLab Issue #72346 - fix to rocoto_viewer on Hera

Adjust efcs walltime and eupd thread value on Orion

Squashed commit of the following: commit ef8b64150a0cb7137b1ec48e9c8f3c7e9b3223de Merge: fca3433b cffc5682 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request #231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc5682f34eb9ab0bbf42ee11eaa848152c0dbc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433bf869b12cade480e1394688d7b6f95687 Merge: a95cce5f abb168bc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request #221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168bc32fdff7b08ce8ecc54ea832aabf03c44 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d965fa6ebee445a509a0593e925ae5d5b513 Merge: a95cce5f e89045b9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b9fb1d9026810ef5c77a3554c67c41718e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5f3e123a241000b209fb50cc8911d13466 Merge: 1562bb97 2646921d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request #216 from NOAA-EMC/issue189 Issue #189 - update ufs-weather-model hash commit 2646921d0da6dc8a136ebeba6cceceacf3806c23 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue #189 - update ufs-weather-model hash commit 1562bb97ac21ce2406ed21f76b7c8d58cecf4a2a Merge: f3d11b9b 7a9bc00e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request #213 from NOAA-EMC/hotfixes Hotfixes - issues #201, 202, 208 commit 7a9bc00e367126044f83b0fc9b737386788899a9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue #201 - workaround for failing post000 job before hpc-stack solution commit 425588f711812819744c8060a46444b9d4bf2b63 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5dd98d80ca3e3d696d5eb19a5a4180c87b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6e1604e9e81ddc384c951861c43e30cdcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8af3cb966fa756e38feaf98ce1f84ee2f3 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bdbf0daa6980766a011f73e2a021aee2341 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) commit 7c7482de947ae686b619fc72e7dd192410b7e0f7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c5b54c19cc9de6898908fdb9d4f8d99baa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264bef7ea71d32426b6b6d77109e73b4235ff Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab6912596d3b343843ba3ef6e8c5f71a21a Merge: 6da1a24b be5f9ece Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ece8329ee6b18af92d044809f018404669b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24ba89c80ee5f5df38136d03483207d39dd Merge: ce1ae970 069f2662 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f2662bc2eabc822f13eec4e2f69f1c39606a8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280cf7351d58b0295af35c91e74ac6925d0b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8417fe6247ed08cd74a447460ba6bb51f9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8dacc8659071eca65be15fb4de08b18d80 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e60c98639c6466ce5903ab03c36a7f5f57 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e6003773c0af51bd15eb2bdb6831c99dcce1cc5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294ee6844f8a5adbd04eae78999068c0961a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4cdf0333e4b8316c8cbda7be9f9dccc543 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf3341bb400d3b3254a05a624e3ab671ef6cd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0cbbabaa5e69e03cec4db309e2adfb33756 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: 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parm/transfer_gdas_enkf_enkf_30.list modified: parm/transfer_gdas_enkf_enkf_35.list modified: parm/transfer_gdas_enkf_enkf_40.list modified: parm/transfer_gdas_enkf_enkf_45.list modified: parm/transfer_gdas_enkf_enkf_50.list modified: parm/transfer_gdas_enkf_enkf_55.list modified: parm/transfer_gdas_enkf_enkf_60.list modified: parm/transfer_gdas_enkf_enkf_65.list modified: parm/transfer_gdas_enkf_enkf_70.list modified: parm/transfer_gdas_enkf_enkf_75.list modified: parm/transfer_gdas_enkf_enkf_80.list modified: parm/transfer_gdas_enkf_enkf_misc.list modified: parm/transfer_gdas_misc.list modified: parm/transfer_gfs_1.list modified: parm/transfer_gfs_10a.list modified: parm/transfer_gfs_10b.list modified: parm/transfer_gfs_2.list modified: parm/transfer_gfs_3.list modified: parm/transfer_gfs_4.list modified: parm/transfer_gfs_5.list modified: parm/transfer_gfs_6.list modified: parm/transfer_gfs_7.list modified: parm/transfer_gfs_8.list modified: parm/transfer_gfs_9a.list modified: parm/transfer_gfs_9b.list modified: parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae9709fe506f32833910f3cf4f68117c7d0f2 Merge: b096e294 e9d00e41 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e41e939fca68a39293b973326531f3c6983 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9bc7e669f4c11266654649c4d5e28f16a9 Merge: e3972f17 32a004aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request #186 from lgannoaa/feature/ccpp Initial support for CCPP. commit 32a004aae3949e8fd3bda7a4f628995317d33f47 Merge: 66cc1a06 036cc113 Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Tue Nov 17 13:15:37 2020 -0500 Merge pull request #2 from KateFriedman-NOAA/ccpp Adjust efcs walltime and eupd thread value on Orion commit 036cc113dcd5787ce4bccfb11fb71ed7935bc982 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 10:44:02 2020 -0600 Adjust efcs walltime and eupd thread value on Orion commit 66cc1a062ba1b430e9ebaf41715997a3de0ff023 Merge: 9e8f9605 2432dc5b Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Mon Nov 16 15:48:34 2020 -0500 Merge pull request #1 from KateFriedman-NOAA/ccpp Fix missing COMROOT setting for Orion commit 2432dc5bbb1b3bc4c317063811333a5b30065794 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 16 14:40:59 2020 -0600 Fix missing COMROOT setting on Orion commit 9e8f960508e82f31e9d57da0fc37600b9697e4c9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:24:08 2020 +0000 Modify build_all.sh while getopts "oc" option to while getopts "c" option commit 587e1986cb5c6307f2d10a01758994ce1155e36d Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:21:16 2020 +0000 scripts/exglobal_forecast.sh Merge with v16ccpp commit 6066462b23d34db815ed73c630ef624c41239215 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:53:44 2020 +0000 As requested, using 2e25df5fe952d27355ed58963148f46b82565469 for ufs-weather-model. commit bf312432b662c3e2b7bd8cd5de19dd5b5ee0c042 Merge: dd7b0068 d59c09c6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:41:32 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp Pull in the iovr=3 in config.fcst commit dd7b0068cf0b598e58af41a92712e393674d14fd Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 14:39:04 2020 +0000 Modify exglobal_forecast.sh to create namelist in runable sequence. commit d59c09c6d9445110871da231ef9945d201986f81 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:06:48 2020 +0000 modified: ../scripts/exglobal_forecast.sh commit d8aa4423f1a6f2c63c00a4ed5a38a4df6501ef7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:04:43 2020 +0000 modified checkout.sh to check out a hash instead of head of the develop branch commit e29fd0c517840a9996987e7ae21f78cc2af8ca12 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 03:00:50 2020 +0000 modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after https://github.com/NCAR/ccpp-physics/pull/514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option commit 1ec0ebf31767422a67e3f56c951f5ccb2305c7e5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 17:48:51 2020 -0500 bug fix exglobal_forecast.sh commit 336647bcaced053baeee43ef2417b34b6b196439 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 12:55:20 2020 -0500 modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} commit 9616b2eef626ce8db2f3a5da343b0a7ece2137cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 04:05:48 2020 +0000 modified: build_fv3.sh commit fe79b87abbeca26939dbcc1ccd7cb5fb2624e666 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 20:11:26 2020 +0000 Clean up development code from build_all commit 9cd719d0609cefb3261870528b88c54d24117c47 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 19:53:31 2020 +0000 Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh commit 8aed1e4d44166ffb6036409bced3ad04f038dfc4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 17:04:07 2020 +0000 modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD commit 7826668c6baaf113785e88b79bc059f8a430eace Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:44:31 2020 +0000 Remove development configuration from config.nsst commit 1e5ebe44fd525135114b0fc74a698cadd2eb5eaa Merge: 0b540d78 b0536156 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:36:06 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp commit 0b540d78c47755cb0bd68a8dc934461ec1bef345 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:35:26 2020 +0000 update eupd resource commit 267c661710562ab620c07212626268f0201c6c20 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:31:56 2020 +0000 Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh commit b0536156ed8383150fc65d5897c6acd17c0df248 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 06:30:25 2020 +0000 modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics commit b80676925e5dca6c26d8dbf59c8ca74c0efe5fcb Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 20:18:08 2020 +0000 sync config.base.emc.dyn and config.resources with development commit 6e6fdd79515966f84334e9319dbb3b9cfff9095c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 19:28:06 2020 +0000 Remove GSD suite file and aero IC extract util commit 8aed527d4358e131fba73785469d1fec957e619a Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:23:21 2020 +0000 deleted: jobs/rocoto/aeroic.sh commit d2191414c48835799e578a6010d7dbfdb6babb78 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:11:43 2020 +0000 Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py commit 490f0a73d852f709e1232d4a4a9ee7f3d95d58d9 Merge: 52f59845 e3972f17 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:49:48 2020 +0000 Merge remote-tracking branch 'upstream/develop' into feature/ccpp commit 52f59845f62bd9cc16b6b1197a7de04a4b4a1d86 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:04:33 2020 +0000 As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. commit e3972f1778242d696bcc4eb4a979d46373e8d193 Merge: 9f7eebaf 671856dd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 12:55:23 2020 -0500 Merge pull request #174 from NOAA-EMC/port2orion GFSv16 release hand-off state, Orion support, and additional low res R&D updates commit b096e2941e4817eace7d8d9e9173ca92a3f72944 Merge: 9fa9ffe9 670b97c2 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 671856ddf96ff4ae2df8a5feacd1b184ce9b8702 Merge: 5383477a 9f7eebaf Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 20:43:26 2020 +0000 Sync merge with develop to resolve conflicts commit 5383477af879dd671dbab066b41eea7e2428e50f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 18:46:43 2020 +0000 Change wavepostbndpnt to wait for fcst to end commit 201abf3e7ed9b5cb66bec43bcb9e4d34b3c6d5f9 Merge: f4ceb182 9fa9ffe9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Nov 5 12:10:32 2020 -0600 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit f4ceb182685a5d6d6fb18b2e40c48ae0623a0794 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 14:49:08 2020 +0000 Hera updates for OUTPUT_FILETYPES and resources commit 896d19529c828a62574c835d6d372701588fe758 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Nov 4 10:19:17 2020 -0600 Set nth_fcst to 4 for C384 deterministic commit 37d01e9fc68517c39b66a1ab67453b016666d590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:06:59 2020 -0600 Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base commit 1a11fd21740860275f9be14caf1e615691075414 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:49:12 2020 +0000 Increase gfsfcst walltime for C192 commit 670b97c2673054b8d18a004390af0093520b1968 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr commit 190b78c8d34f60e84c80b47a97cb4184e4e11fd9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 18:41:32 2020 +0000 Set nth_fcst to 4 for C384 on Hera to handle less memory commit 713c51eabc40b80e02314b5955b0efab3b235344 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 17:54:49 2020 +0000 Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn commit 306ea5f15120d808760bd58b247b5861a8813670 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 10:43:20 2020 -0600 Reduce C384 nth_fv3 to 1 in config.fv3 commit 9fa9ffe97d23ad69c33658875c9b0c3440c2c97f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 15:24:48 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 commit 24226384780c9c2438abec1864923f87371798d4 Merge: 70593343 a3b46385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:48:13 2020 +0000 Merge branch 'release/gfsv16.0.0' of https://github.com/NOAA-EMC/global-workflow into release/gfsv16.0.0 commit 705933436f2f42d5fde17b8aa4a57918f2c66b6a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:46:51 2020 +0000 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. commit c9e0566eb2e6179410583c14d48a971a79dc4c88 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 29 20:50:46 2020 +0000 Revert epos change in setup_workflow.py commit a3b463859154c1127bb66764a65baa89929a0a5f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 28 18:18:51 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 commit ab0577de3c4bbbdc58219fd1c95a142cf93b5f4a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 28 13:52:34 2020 +0000 Issue #1 - update anal, eobs, and eupd resources for low res commit 97f1ae89baf37d8bd1940f179fecb6bdc1279fa2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 27 17:52:28 2020 +0000 Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO commit cb6d74e0c7363f7e54d879a97f457f7d4a37d926 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 15:56:58 2020 -0400 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md commit c09678fb33d0ece36de1af223b5cdf8384d5b9c3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 14:43:09 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit 59f08b31916d3585aa9a4832dc9de865e3a350cf Merge: cbe5ddff 1171a622 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 19:47:42 2020 +0000 Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp commit cbe5ddff8013a03a9391eead40796f9c30d7ca28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 18:35:49 2020 +0000 Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. commit 1171a62238f0877fc8956df669f07fc9a418c145 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 22 14:01:31 2020 +0000 Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera commit c3bab19722a8b301e9ac4d2367b7e3e5dc2d88e7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 21 20:13:38 2020 +0000 Fix wrong DATE in new if-block in config.anal for cold start checking commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 Issue #1 - add parm mon folder to ignore list and move parm section of ignore list up commit d632c87a8f2ce85d54fa45da14aa09f91a0ec680 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:20:31 2020 +0000 Issue #1 - add FDATE to config.base commit 22d4118f4bc7853fa81f6505fd9aaf5bc6dab4f8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:12:29 2020 +0000 Issue #1 - save GFSv16 hand-off resource settings into new static nco configs commit 6fd73d7fdf40b291ff49193b606538b540e46139 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:11:37 2020 +0000 Issue #1 - new FV3 tag that builds on Hera/Orion and update for building/running high res system on Hera commit 484550c13d8ef957478f20afd6e722f7f610bb8f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 16 15:40:35 2020 +0000 Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 58dcf6d961f7478fec64a850e7bcd19ffd8f3741 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 15:08:38 2020 -0500 Update .gitignore for script renaming and removed external files commit e3f8df65082853baa5a22ed3b242efdae66d40ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 11:59:58 2020 -0500 Add wave env updates into ORION.env, increase waveinit tasks, and update resources for analysis and efcs walltimes commit 4da0feaaf8b63ee4662be8be9c5f59d547164b0b Merge: ee0f27b3 31563a59 Author: lin.gan <lin.gan@noaa.gov> Date: Tue Oct 13 20:51:48 2020 +0000 Merge remote-tracking branch 'origin/feature/gfsv16b' into feature/ccpp commit e5e7cf1ea61d99080ec95b446c1bee45a57321a3 Merge: a1a7ac94 4b2d26db Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 14:25:56 2020 -0500 Sync merge with release/gfsv16.0.0 branch commit 4b2d26db3b9b66ecfdd4756bfcddb6e16f255b03 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 17:41:24 2020…

Squashed commit of the following: commit 479000a5e7b4b9c575784ecca400594525396556 Merge: bbf30008 5a16a7a0 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Jan 21 11:31:41 2021 -0500 Merge pull request #244 from NOAA-EMC/issue243 Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera commit 5a16a7a010477b5bbe530a684608b151b8f05755 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 21 16:27:54 2021 +0000 Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera commit bbf3000856ebb20ca761c6e7d761f5fcefad0228 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 15 18:36:20 2021 +0000 HOTFIX: Issue #241 - update EMC_verif-global tag to remove use of /tmp space commit 43ae19be02687cdc362a34e11d299009f3dd8ffc Merge: c7e6a7f8 48be4d18 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Jan 14 10:35:16 2021 -0500 Merge pull request #239 from KateFriedman-NOAA/issue179 Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion commit 48be4d18263ea4f1c706c55e4b6b70d87f19c729 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 14 08:38:20 2021 -0600 Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion commit c7e6a7f8c6f7b0d5648b1379633c252f165c2ca6 Merge: ef8b6415 4be7954d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jan 13 14:20:49 2021 -0500 Merge pull request #237 from KateFriedman-NOAA/issue233 Update GLDAS tag to gldas_gfsv16_release.v1.13.0 commit 4be7954ddcbb56e7ee5167f6d43054d8821b6a4f Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 5 12:06:51 2021 -0600 Issue #233 - remove unnecessary extra space in tag line for gldas commit bcbdd12c39124eae14ec0b52d0a05b7c6944c27e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 5 12:03:15 2021 -0600 Issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0 commit ef8b64150a0cb7137b1ec48e9c8f3c7e9b3223de Merge: fca3433b cffc5682 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request #231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc5682f34eb9ab0bbf42ee11eaa848152c0dbc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433bf869b12cade480e1394688d7b6f95687 Merge: a95cce5f abb168bc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request #221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168bc32fdff7b08ce8ecc54ea832aabf03c44 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d965fa6ebee445a509a0593e925ae5d5b513 Merge: a95cce5f e89045b9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b9fb1d9026810ef5c77a3554c67c41718e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5f3e123a241000b209fb50cc8911d13466 Merge: 1562bb97 2646921d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request #216 from NOAA-EMC/issue189 Issue #189 - update ufs-weather-model hash commit 2646921d0da6dc8a136ebeba6cceceacf3806c23 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue #189 - update ufs-weather-model hash commit 1562bb97ac21ce2406ed21f76b7c8d58cecf4a2a Merge: f3d11b9b 7a9bc00e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request #213 from NOAA-EMC/hotfixes Hotfixes - issues #201, 202, 208 commit 7a9bc00e367126044f83b0fc9b737386788899a9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue #201 - workaround for failing post000 job before hpc-stack solution commit 425588f711812819744c8060a46444b9d4bf2b63 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5dd98d80ca3e3d696d5eb19a5a4180c87b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6e1604e9e81ddc384c951861c43e30cdcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8af3cb966fa756e38feaf98ce1f84ee2f3 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bdbf0daa6980766a011f73e2a021aee2341 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) commit 7c7482de947ae686b619fc72e7dd192410b7e0f7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c5b54c19cc9de6898908fdb9d4f8d99baa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264bef7ea71d32426b6b6d77109e73b4235ff Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab6912596d3b343843ba3ef6e8c5f71a21a Merge: 6da1a24b be5f9ece Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ece8329ee6b18af92d044809f018404669b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24ba89c80ee5f5df38136d03483207d39dd Merge: ce1ae970 069f2662 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f2662bc2eabc822f13eec4e2f69f1c39606a8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280cf7351d58b0295af35c91e74ac6925d0b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8417fe6247ed08cd74a447460ba6bb51f9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8dacc8659071eca65be15fb4de08b18d80 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e60c98639c6466ce5903ab03c36a7f5f57 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e6003773c0af51bd15eb2bdb6831c99dcce1cc5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294ee6844f8a5adbd04eae78999068c0961a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4cdf0333e4b8316c8cbda7be9f9dccc543 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf3341bb400d3b3254a05a624e3ab671ef6cd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0cbbabaa5e69e03cec4db309e2adfb33756 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_calc.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_diag.ecf modified: ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak.ecf modified: ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak_meta_ncdc.ecf modified: ecflow/ecf/scripts/gdas/atmos/init/jgdas_atmos_gldas.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump_alert.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump_post.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_tropcy_qc_reloc.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_emcsfc_sfc_prep.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_prep.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_prep_post.ecf modified: ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_anl.ecf modified: 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ecflow/ecf/scripts/gfs/wave/post/jgfs_wave_prdgen_bulls.ecf modified: ecflow/ecf/scripts/gfs/wave/post/jgfs_wave_prdgen_gridded.ecf modified: ecflow/ecf/scripts/gfs/wave/prep/jgfs_wave_prep.ecf modified: jobs/JGFS_ATMOS_POSTSND modified: jobs/JGLOBAL_ATMOS_EMCSFC_SFC_PREP modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_INIT modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: jobs/JGLOBAL_WAVE_PREP modified: parm/config/config.wave modified: parm/transfer_gdas_1a.list modified: parm/transfer_gdas_1b.list modified: parm/transfer_gdas_1c.list modified: parm/transfer_gdas_enkf_enkf_05.list modified: parm/transfer_gdas_enkf_enkf_10.list modified: parm/transfer_gdas_enkf_enkf_15.list modified: parm/transfer_gdas_enkf_enkf_20.list modified: parm/transfer_gdas_enkf_enkf_25.list modified: parm/transfer_gdas_enkf_enkf_30.list modified: parm/transfer_gdas_enkf_enkf_35.list modified: parm/transfer_gdas_enkf_enkf_40.list modified: parm/transfer_gdas_enkf_enkf_45.list modified: parm/transfer_gdas_enkf_enkf_50.list modified: parm/transfer_gdas_enkf_enkf_55.list modified: parm/transfer_gdas_enkf_enkf_60.list modified: parm/transfer_gdas_enkf_enkf_65.list modified: parm/transfer_gdas_enkf_enkf_70.list modified: parm/transfer_gdas_enkf_enkf_75.list modified: parm/transfer_gdas_enkf_enkf_80.list modified: parm/transfer_gdas_enkf_enkf_misc.list modified: parm/transfer_gdas_misc.list modified: parm/transfer_gfs_1.list modified: parm/transfer_gfs_10a.list modified: parm/transfer_gfs_10b.list modified: parm/transfer_gfs_2.list modified: parm/transfer_gfs_3.list modified: parm/transfer_gfs_4.list modified: parm/transfer_gfs_5.list modified: parm/transfer_gfs_6.list modified: parm/transfer_gfs_7.list modified: parm/transfer_gfs_8.list modified: parm/transfer_gfs_9a.list modified: parm/transfer_gfs_9b.list modified: parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae9709fe506f32833910f3cf4f68117c7d0f2 Merge: b096e294 e9d00e41 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e41e939fca68a39293b973326531f3c6983 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9bc7e669f4c11266654649c4d5e28f16a9 Merge: e3972f17 32a004aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request #186 from lgannoaa/feature/ccpp Initial support for CCPP. commit 32a004aae3949e8fd3bda7a4f628995317d33f47 Merge: 66cc1a06 036cc113 Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Tue Nov 17 13:15:37 2020 -0500 Merge pull request #2 from KateFriedman-NOAA/ccpp Adjust efcs walltime and eupd thread value on Orion commit 036cc113dcd5787ce4bccfb11fb71ed7935bc982 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 10:44:02 2020 -0600 Adjust efcs walltime and eupd thread value on Orion commit 66cc1a062ba1b430e9ebaf41715997a3de0ff023 Merge: 9e8f9605 2432dc5b Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Mon Nov 16 15:48:34 2020 -0500 Merge pull request #1 from KateFriedman-NOAA/ccpp Fix missing COMROOT setting for Orion commit 2432dc5bbb1b3bc4c317063811333a5b30065794 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 16 14:40:59 2020 -0600 Fix missing COMROOT setting on Orion commit 9e8f960508e82f31e9d57da0fc37600b9697e4c9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:24:08 2020 +0000 Modify build_all.sh while getopts "oc" option to while getopts "c" option commit 587e1986cb5c6307f2d10a01758994ce1155e36d Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:21:16 2020 +0000 scripts/exglobal_forecast.sh Merge with v16ccpp commit 6066462b23d34db815ed73c630ef624c41239215 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:53:44 2020 +0000 As requested, using 2e25df5fe952d27355ed58963148f46b82565469 for ufs-weather-model. commit bf312432b662c3e2b7bd8cd5de19dd5b5ee0c042 Merge: dd7b0068 d59c09c6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:41:32 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp Pull in the iovr=3 in config.fcst commit dd7b0068cf0b598e58af41a92712e393674d14fd Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 14:39:04 2020 +0000 Modify exglobal_forecast.sh to create namelist in runable sequence. commit d59c09c6d9445110871da231ef9945d201986f81 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:06:48 2020 +0000 modified: ../scripts/exglobal_forecast.sh commit d8aa4423f1a6f2c63c00a4ed5a38a4df6501ef7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:04:43 2020 +0000 modified checkout.sh to check out a hash instead of head of the develop branch commit e29fd0c517840a9996987e7ae21f78cc2af8ca12 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 03:00:50 2020 +0000 modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after https://github.com/NCAR/ccpp-physics/pull/514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option commit 1ec0ebf31767422a67e3f56c951f5ccb2305c7e5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 17:48:51 2020 -0500 bug fix exglobal_forecast.sh commit 336647bcaced053baeee43ef2417b34b6b196439 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 12:55:20 2020 -0500 modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} commit 9616b2eef626ce8db2f3a5da343b0a7ece2137cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 04:05:48 2020 +0000 modified: build_fv3.sh commit fe79b87abbeca26939dbcc1ccd7cb5fb2624e666 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 20:11:26 2020 +0000 Clean up development code from build_all commit 9cd719d0609cefb3261870528b88c54d24117c47 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 19:53:31 2020 +0000 Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh commit 8aed1e4d44166ffb6036409bced3ad04f038dfc4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 17:04:07 2020 +0000 modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD commit 7826668c6baaf113785e88b79bc059f8a430eace Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:44:31 2020 +0000 Remove development configuration from config.nsst commit 1e5ebe44fd525135114b0fc74a698cadd2eb5eaa Merge: 0b540d78 b0536156 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:36:06 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp commit 0b540d78c47755cb0bd68a8dc934461ec1bef345 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:35:26 2020 +0000 update eupd resource commit 267c661710562ab620c07212626268f0201c6c20 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:31:56 2020 +0000 Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh commit b0536156ed8383150fc65d5897c6acd17c0df248 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 06:30:25 2020 +0000 modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics commit b80676925e5dca6c26d8dbf59c8ca74c0efe5fcb Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 20:18:08 2020 +0000 sync config.base.emc.dyn and config.resources with development commit 6e6fdd79515966f84334e9319dbb3b9cfff9095c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 19:28:06 2020 +0000 Remove GSD suite file and aero IC extract util commit 8aed527d4358e131fba73785469d1fec957e619a Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:23:21 2020 +0000 deleted: jobs/rocoto/aeroic.sh commit d2191414c48835799e578a6010d7dbfdb6babb78 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:11:43 2020 +0000 Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py commit 490f0a73d852f709e1232d4a4a9ee7f3d95d58d9 Merge: 52f59845 e3972f17 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:49:48 2020 +0000 Merge remote-tracking branch 'upstream/develop' into feature/ccpp commit 52f59845f62bd9cc16b6b1197a7de04a4b4a1d86 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:04:33 2020 +0000 As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. commit e3972f1778242d696bcc4eb4a979d46373e8d193 Merge: 9f7eebaf 671856dd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 12:55:23 2020 -0500 Merge pull request #174 from NOAA-EMC/port2orion GFSv16 release hand-off state, Orion support, and additional low res R&D updates commit b096e2941e4817eace7d8d9e9173ca92a3f72944 Merge: 9fa9ffe9 670b97c2 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 671856ddf96ff4ae2df8a5feacd1b184ce9b8702 Merge: 5383477a 9f7eebaf Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 20:43:26 2020 +0000 Sync merge with develop to resolve conflicts commit 5383477af879dd671dbab066b41eea7e2428e50f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 18:46:43 2020 +0000 Change wavepostbndpnt to wait for fcst to end commit 201abf3e7ed9b5cb66bec43bcb9e4d34b3c6d5f9 Merge: f4ceb182 9fa9ffe9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Nov 5 12:10:32 2020 -0600 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit f4ceb182685a5d6d6fb18b2e40c48ae0623a0794 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 14:49:08 2020 +0000 Hera updates for OUTPUT_FILETYPES and resources commit 896d19529c828a62574c835d6d372701588fe758 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Nov 4 10:19:17 2020 -0600 Set nth_fcst to 4 for C384 deterministic commit 37d01e9fc68517c39b66a1ab67453b016666d590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:06:59 2020 -0600 Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base commit 1a11fd21740860275f9be14caf1e615691075414 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:49:12 2020 +0000 Increase gfsfcst walltime for C192 commit 670b97c2673054b8d18a004390af0093520b1968 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr commit 190b78c8d34f60e84c80b47a97cb4184e4e11fd9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 18:41:32 2020 +0000 Set nth_fcst to 4 for C384 on Hera to handle less memory commit 713c51eabc40b80e02314b5955b0efab3b235344 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 17:54:49 2020 +0000 Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn commit 306ea5f15120d808760bd58b247b5861a8813670 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 10:43:20 2020 -0600 Reduce C384 nth_fv3 to 1 in config.fv3 commit 9fa9ffe97d23ad69c33658875c9b0c3440c2c97f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 15:24:48 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 commit 24226384780c9c2438abec1864923f87371798d4 Merge: 70593343 a3b46385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:48:13 2020 +0000 Merge branch 'release/gfsv16.0.0' of https://github.com/NOAA-EMC/global-workflow into release/gfsv16.0.0 commit 705933436f2f42d5fde17b8aa4a57918f2c66b6a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:46:51 2020 +0000 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. commit c9e0566eb2e6179410583c14d48a971a79dc4c88 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 29 20:50:46 2020 +0000 Revert epos change in setup_workflow.py commit a3b463859154c1127bb66764a65baa89929a0a5f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 28 18:18:51 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 commit ab0577de3c4bbbdc58219fd1c95a142cf93b5f4a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 28 13:52:34 2020 +0000 Issue #1 - update anal, eobs, and eupd resources for low res commit 97f1ae89baf37d8bd1940f179fecb6bdc1279fa2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 27 17:52:28 2020 +0000 Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO commit cb6d74e0c7363f7e54d879a97f457f7d4a37d926 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 15:56:58 2020 -0400 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md commit c09678fb33d0ece36de1af223b5cdf8384d5b9c3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 14:43:09 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit 59f08b31916d3585aa9a4832dc9de865e3a350cf Merge: cbe5ddff 1171a622 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 19:47:42 2020 +0000 Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp commit cbe5ddff8013a03a9391eead40796f9c30d7ca28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 18:35:49 2020 +0000 Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. commit 1171a62238f0877fc8956df669f07fc9a418c145 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 22 14:01:31 2020 +0000 Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera commit c3bab19722a8b301e9ac4d2367b7e3e5dc2d88e7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 21 20:13:38 2020 +0000 Fix wrong DATE in new if-block in config.anal for cold start checking commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 …

RussTreadon-NOAA and others added 8 commits June 10, 2020 14:36

Issue #1: update parm/config/config.base.emc.dyn to be consistent wit…

4405a2c

…h GFS v16 real-time parallel config.base

Add makefiles for a linux target.

459a159

Make necessary source code changes for linux target.

d48da08

Merge linux setup files for gnu/intel.

7de4199

Modify GEMPAK path.

c77c9a8

Add missing module files.

d5ad0ae

Set netcdf include directory env. variable.

98c6909

Add docker capability as external repo.

06242e1

dshawul marked this pull request as ready for review June 11, 2020 18:59

dshawul closed this Jun 11, 2020

christopherwharrop-noaa pushed a commit that referenced this pull request Sep 28, 2020

Merge pull request #2 from KateFriedman-NOAA/feature/gfsv16b-wave

f0e3ae5

Feature/gfsv16b wave

ShanSunNOAA pushed a commit to ShanSunNOAA/global-workflow that referenced this pull request Jul 12, 2021

Merge pull request NOAA-GSL#2 from KateFriedman-NOAA/ccpp

32a004a

Adjust efcs walltime and eupd thread value on Orion

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dshawul commented Jun 11, 2020

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dshawul commented Jun 11, 2020