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Can MSFragger perform protein grouping for multiple enzymatic digest? #41

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TeckYewLow opened this issue Mar 25, 2023 · 2 comments
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Can MSFragger perform protein grouping for multiple enzymatic digest? #41

TeckYewLow opened this issue Mar 25, 2023 · 2 comments

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@TeckYewLow
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Hi,

I have a sample that was digested with 5 proteases. I am wondering if I can run these as a group and only produce one protein.tsv file that covers different digests? I want to improve coverage of proteins.

Thank you.
@fcyu
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fcyu commented Mar 25, 2023

It seems to be the same one as your previous question. I have transferred it to Nesvilab/FragPipe#1052 since it is not only related to IonQuant but FragPipe.
Best,

Fengchao

@fcyu fcyu closed this as completed Mar 25, 2023
@TeckYewLow
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TeckYewLow commented Mar 25, 2023 via email

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@fcyu @TeckYewLow