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added -validate-sbml option #266

Merged
merged 14 commits into from
Nov 15, 2023
Merged

added -validate-sbml option #266

merged 14 commits into from
Nov 15, 2023

Commits on Oct 26, 2023

  1. initial attempt at a validate-sbml option for pynml.py

    @robertvi
    robertvi committed Oct 26, 2023
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  2. minor tweaks

    @robertvi
    robertvi committed Oct 26, 2023
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Commits on Oct 27, 2023

  1. added libsbml as an optional extra requirement

    @robertvi
    robertvi committed Oct 27, 2023
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  2. fix package name

    @robertvi
    robertvi committed Oct 27, 2023
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Commits on Oct 30, 2023

  1. pyneuroml/sbml/__init__.py now passing flake8 and black

    @robertvi
    robertvi committed Oct 30, 2023
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  2. pyneuroml/pynml.py changed by black

    @robertvi
    robertvi committed Oct 30, 2023
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Commits on Nov 8, 2023

  1. converted my simple test into a pytest-able function, callable using … 

    …pytest -k <func name>
    @robertvi
    robertvi committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. improving error handling

    @robertvi
    robertvi committed Nov 9, 2023
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Commits on Nov 10, 2023

  1. tidied up error handling, corrected error code range

    @robertvi
    robertvi committed Nov 10, 2023
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  2. expanded the sbml test function

    @robertvi
    robertvi committed Nov 10, 2023
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Commits on Nov 13, 2023

  1. more accurate exception handling

    @robertvi
    robertvi committed Nov 13, 2023
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  2. added a test for both unit inconsistency check modes

    @robertvi
    robertvi committed Nov 13, 2023
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  3. added two more test cases

    @robertvi
    robertvi committed Nov 13, 2023
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  4. added simple examples to test-ghactions.sh

    @robertvi
    robertvi committed Nov 13, 2023
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