fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev #40995

timokau · 2018-05-23T14:40:24Z

Motivation for this change

This fixes the fpylll tests on 32 bit machines (see fplll/fpylll#112).

Things done

Tested using sandboxing (nix.useSandbox on NixOS, or option build-use-sandbox in nix.conf on non-NixOS)
Built on platform(s)
- NixOS
- macOS
- other Linux distributions
Tested via one or more NixOS test(s) if existing and applicable for the change (look inside nixos/tests)
Tested compilation of all pkgs that depend on this change using nix-shell -p nox --run "nox-review wip"
Tested execution of all binary files (usually in ./result/bin/)
Fits CONTRIBUTING.md.

GrahamcOfBorg · 2018-05-23T14:52:16Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: fplll

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-05-23T14:54:19Z

Success on x86_64-linux (full log)

Attempted: fplll

Partial log (click to expand)

shrinking RPATHs of ELF executables and libraries in /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1
shrinking /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1/lib/libfplll.so.5.0.0
shrinking /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1/bin/fplll
shrinking /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1/bin/latticegen
shrinking /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1/bin/latsieve
strip is /nix/store/j75dgadrff2d1fyc4fczmcgqkid2imdx-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1/lib  /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1/bin
patching script interpreter paths in /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1
checking for references to /build in /nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1...
/nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1

GrahamcOfBorg · 2018-05-23T15:05:43Z

Success on aarch64-linux (full log)

Attempted: fplll

Partial log (click to expand)

shrinking RPATHs of ELF executables and libraries in /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1
shrinking /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1/bin/latsieve
shrinking /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1/bin/latticegen
shrinking /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1/bin/fplll
shrinking /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1/lib/libfplll.so.5.0.0
strip is /nix/store/jk6j4lh9v5mvjdbdc35sj0zffhhf6s56-binutils-2.30/bin/strip
stripping (with command strip and flags -S) in /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1/lib  /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1/bin
patching script interpreter paths in /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1
checking for references to /build in /nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1...
/nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1

timokau · 2018-05-23T15:17:53Z

I needed to add a patch to fix the README encoding for python3 (fplll/fpylll#121).

@GrahamcOfBorg build python2Packages.fpylll python3Packages.fpylll

GrahamcOfBorg · 2018-05-23T15:25:01Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: python2Packages.fpylll, python3Packages.fpylll

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-05-23T15:26:02Z

Success on x86_64-linux (full log)

Attempted: python2Packages.fpylll, python3Packages.fpylll

Partial log (click to expand)

tests/test_precision.py .                                                [ 75%]
tests/test_pruner.py .                                                   [ 79%]
tests/test_random.py .                                                   [ 83%]
tests/test_simple_bkz.py ..                                              [ 91%]
tests/test_strategies.py .                                               [ 95%]
tests/test_util.py .                                                     [100%]

========================== 24 passed in 24.02 seconds ==========================
/nix/store/js2piqgvdna5jyn487l16vls55idny8l-python2.7-fpylll-0.4.0dev
/nix/store/dddj023c6mv44pafwfy10b8sxxcwzlfy-python3.6-fpylll-0.4.0dev

GrahamcOfBorg · 2018-05-23T16:18:29Z

Failure on aarch64-linux (full log)

Attempted: python2Packages.fpylll, python3Packages.fpylll

Partial log (click to expand)

/nix/store/6p0715xklf0qr64ia3jqaav47j31ds2j-python2.7-numpy-1.14.2/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \
  ^~~~~~~
building of '/nix/store/xpg1zk3gwmlapnsvlmvw3p3zizs7c3ky-python2.7-Cython-0.28.1.drv' timed out after 3600 seconds
cannot build derivation '/nix/store/i9ixr29088pfvf859bg98b21p173dig5-python2.7-cysignals-1.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/4h4hpd4n82x7m7jjgamgyljvh8rdjz5m-python2.7-fpylll-0.4.0dev.drv': 2 dependencies couldn't be built
building of '/nix/store/xpci0kq0rbsvj7ag9an298cy2z34skhy-python3.6-Cython-0.28.1.drv' timed out after 3600 seconds
cannot build derivation '/nix/store/qp0q7gwpwbqmblldjki2y8xh2qd4f48n-python3.6-cysignals-1.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/7vb33x30xj0jkkqpbv3gac4hfcjfqfky-python3.6-fpylll-0.4.0dev.drv': 2 dependencies couldn't be built
�[31;1merror:�[0m build of '/nix/store/4h4hpd4n82x7m7jjgamgyljvh8rdjz5m-python2.7-fpylll-0.4.0dev.drv', '/nix/store/7vb33x30xj0jkkqpbv3gac4hfcjfqfky-python3.6-fpylll-0.4.0dev.drv' failed

timokau · 2018-05-23T16:27:12Z

"building of '/nix/store/xpg1zk3gwmlapnsvlmvw3p3zizs7c3ky-python2.7-Cython-0.28.1.drv' timed out after 3600 seconds"

Failure seems unrelated, I think this is ready for merge.

FRidh · 2018-05-23T16:38:20Z

pkgs/development/python-modules/fpylll/default.nix

@@ -46,6 +46,11 @@ buildPythonPackage rec {
    py.test
  '';

+  patches = [
+    # https://github.com/fplll/fpylll/issues/121
+    ./readme-encoding.patch


Upstream patched it
fplll/fpylll@8ce149b
They're fast :)

Yeah apparently the author is thinking about cutting a new release that includes that fix, so maybe its worth waiting for that (https://trac.sagemath.org/ticket/25404#comment:8).

I've updated to release 0.4.1 which includes the fix. I had to change from fetchPyPi to fetchFromGitHub since its not on PyPi yet, is that a problem? I think fetching straight from the source is better anyways if pypi doesn't have any other advantages.

timokau · 2018-05-24T13:17:55Z

@GrahamcOfBorg build python2Packages.fpylll python3Packages.fpylll

GrahamcOfBorg · 2018-05-24T13:18:19Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: python2Packages.fpylll, python3Packages.fpylll

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-05-24T13:23:55Z

Success on x86_64-linux (full log)

Attempted: python2Packages.fpylll, python3Packages.fpylll

Partial log (click to expand)

tests/test_pruner.py::test_pruner PASSED                                 [ 79%]
tests/test_random.py::test_randomize PASSED                              [ 83%]
tests/test_simple_bkz.py::test_simple_bkz_init PASSED                    [ 87%]
tests/test_simple_bkz.py::test_simple_bkz_reduction PASSED               [ 91%]
tests/test_strategies.py::test_linear_pruning PASSED                     [ 95%]
tests/test_util.py::test_gh PASSED                                       [100%]

========================== 24 passed in 27.27 seconds ==========================
/nix/store/qgi5lb3f2j150fmkfv9qvxq2gwwfm92x-python2.7-fpylll-0.4.1dev
/nix/store/v4zjl5nszflfm05nd3ng4d4j54z0cprv-python3.6-fpylll-0.4.1dev

GrahamcOfBorg · 2018-05-24T13:28:59Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: fplll

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-05-24T13:28:59Z

Success on x86_64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1

GrahamcOfBorg · 2018-05-24T13:32:41Z

Success on x86_64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1

GrahamcOfBorg · 2018-05-24T13:32:41Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: fplll

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-05-24T13:32:59Z

Success on aarch64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1

GrahamcOfBorg · 2018-05-24T14:18:32Z

Failure on aarch64-linux (full log)

Attempted: python2Packages.fpylll, python3Packages.fpylll

Partial log (click to expand)

  ^~~~~~~
acquired default
acquired Global_A
building of '/nix/store/xpg1zk3gwmlapnsvlmvw3p3zizs7c3ky-python2.7-Cython-0.28.1.drv' timed out after 3600 seconds
building of '/nix/store/xpci0kq0rbsvj7ag9an298cy2z34skhy-python3.6-Cython-0.28.1.drv' timed out after 3600 seconds
cannot build derivation '/nix/store/i9ixr29088pfvf859bg98b21p173dig5-python2.7-cysignals-1.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/qp0q7gwpwbqmblldjki2y8xh2qd4f48n-python3.6-cysignals-1.7.1.drv': 1 dependencies couldn't be built
cannot build derivation '/nix/store/j0n234qqlznmv956aa5xb7glw5i0f58v-python2.7-fpylll-0.4.1dev.drv': 2 dependencies couldn't be built
cannot build derivation '/nix/store/q4jb79lslmffa1438jk3h9g1lv0g16y0-python3.6-fpylll-0.4.1dev.drv': 2 dependencies couldn't be built
�[31;1merror:�[0m build of '/nix/store/j0n234qqlznmv956aa5xb7glw5i0f58v-python2.7-fpylll-0.4.1dev.drv', '/nix/store/q4jb79lslmffa1438jk3h9g1lv0g16y0-python3.6-fpylll-0.4.1dev.drv' failed

timokau · 2018-05-24T14:22:17Z

Failure is still unrelated.

dotlambda

Please split the commit into two seperate ones and add a pythonPackages. prefix to the appropriate one.

timokau · 2018-05-24T14:33:35Z

Its one commit for a reason since the two updates depend on each other. I've added the prefix.

dotlambda · 2018-05-24T14:34:45Z

@GrahamcOfBorg build fplll

GrahamcOfBorg · 2018-05-24T14:34:55Z

Success on x86_64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1

dotlambda · 2018-05-24T14:36:25Z

Thanks!

GrahamcOfBorg · 2018-05-24T14:37:26Z

Success on aarch64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1

GrahamcOfBorg · 2018-05-24T14:45:54Z

Success on x86_64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/6dax7pf10na7mr4syy8v0dbwsaiixzcy-fplll-5.2.1

GrahamcOfBorg · 2018-05-24T14:45:58Z

No attempt on x86_64-darwin (full log)

The following builds were skipped because they don't evaluate on x86_64-darwin: fplll

Partial log (click to expand)


a) For `nixos-rebuild` you can set
  { nixpkgs.config.allowUnsupportedSystem = true; }
in configuration.nix to override this.

b) For `nix-env`, `nix-build`, `nix-shell` or any other Nix command you can add
  { allowUnsupportedSystem = true; }
to ~/.config/nixpkgs/config.nix.

GrahamcOfBorg · 2018-05-24T14:47:22Z

Success on aarch64-linux (full log)

Attempted: fplll

Partial log (click to expand)

/nix/store/ss672gnmaa8w0zzqjhjbk1qdijhd0bkv-fplll-5.2.1

timokau requested a review from FRidh as a code owner May 23, 2018 14:40

GrahamcOfBorg added the 6.topic: python label May 23, 2018

timokau changed the title ~~fplll: 5.2.0 -> 5.2.1, fpylll: 0.3.0dev -> 0.4.0dev~~ [WIP] fplll: 5.2.0 -> 5.2.1, fpylll: 0.3.0dev -> 0.4.0dev May 23, 2018

GrahamcOfBorg added 10.rebuild-darwin: 1-10 10.rebuild-linux: 1-10 labels May 23, 2018

timokau force-pushed the fplll-update branch from 8a96717 to 8e19a20 Compare May 23, 2018 15:17

timokau changed the title ~~[WIP] fplll: 5.2.0 -> 5.2.1, fpylll: 0.3.0dev -> 0.4.0dev~~ fplll: 5.2.0 -> 5.2.1, fpylll: 0.3.0dev -> 0.4.0dev May 23, 2018

FRidh reviewed May 23, 2018

View reviewed changes

timokau force-pushed the fplll-update branch from 8e19a20 to 663188e Compare May 24, 2018 13:15

timokau force-pushed the fplll-update branch from 663188e to 07aeabc Compare May 24, 2018 13:21

dotlambda requested changes May 24, 2018

View reviewed changes

fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev

fe40994

timokau force-pushed the fplll-update branch from 07aeabc to fe40994 Compare May 24, 2018 14:33

timokau changed the title ~~fplll: 5.2.0 -> 5.2.1, fpylll: 0.3.0dev -> 0.4.0dev~~ fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev May 24, 2018

dotlambda merged commit c8987a7 into NixOS:master May 24, 2018

timokau deleted the fplll-update branch May 24, 2018 14:39

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fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev #40995

fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev #40995

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fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev #40995

fplll: 5.2.0 -> 5.2.1, pythonPackages.fpylll: 0.3.0dev -> 0.4.0dev #40995

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timokau commented May 23, 2018 • edited Loading

Motivation for this change

Things done

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