bowtie2: 2.3.4.3 -> 2.3.5

[r-ryantm]

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bowtie2/versions.

meta.description for bowtie2 is: '"An ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences"'.

Release on GitHub

Compare changes on GitHub

Checks done (click to expand)

• built on NixOS
• /bin/sh passed the binary check.
• 1 of 1 passed binary check by having a zero exit code.
• 0 of 1 passed binary check by having the new version present in output.
• found 2.3.5 with grep in /nix/store/gf1jxbmmdrf6w4fg6b4z529dpki2h2n9-bowtie2-2.3.5
• directory tree listing: https://gist.github.com/b265664703bf7d7cc66689a598f0948b
• du listing: https://gist.github.com/3059576818c6cbb7c56a0a3fbac821be

Rebuild report (if merged into master) (click to expand)

4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
bowtie2

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/gf1jxbmmdrf6w4fg6b4z529dpki2h2n9-bowtie2-2.3.5 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A bowtie2 https://github.com/r-ryantm/nixpkgs/archive/67e160a3593806dad22049c6cf0ed7bf23bdfefc.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/gf1jxbmmdrf6w4fg6b4z529dpki2h2n9-bowtie2-2.3.5
ls -la /nix/store/gf1jxbmmdrf6w4fg6b4z529dpki2h2n9-bowtie2-2.3.5/bin

cc @rybern for testing.