picard-tools: 2.18.27 -> 2.19.0

[r-ryantm]

Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/picard-tools/versions.

meta.description for picard-tools is: '"Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF"'.

Release on GitHub

Compare changes on GitHub

Checks done (click to expand)

• built on NixOS
• /bin/sh passed the binary check.
• 1 of 1 passed binary check by having a zero exit code.
• 0 of 1 passed binary check by having the new version present in output.
• found 2.19.0 with grep in /nix/store/xjm2cyw2ryxp2m6nfrr4ql69yvy5arsb-picard-tools-2.19.0
• directory tree listing: https://gist.github.com/c939fa23e3e0a4cb53ae6944cc8f8b41
• du listing: https://gist.github.com/4c098cc32260b803e881cae12032e4d3

Rebuild report (if merged into master) (click to expand)

4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
picard-tools

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/xjm2cyw2ryxp2m6nfrr4ql69yvy5arsb-picard-tools-2.19.0 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)

Or, build yourself:

nix-build -A picard-tools https://github.com/r-ryantm/nixpkgs/archive/07cdba7a9df93aec52f909b5a584deb496c4118c.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/xjm2cyw2ryxp2m6nfrr4ql69yvy5arsb-picard-tools-2.19.0
ls -la /nix/store/xjm2cyw2ryxp2m6nfrr4ql69yvy5arsb-picard-tools-2.19.0/bin

cc @jbedo for testing.

[tomberek]

Builds, runs on Ubuntu, no reverse dependencies.
Minimal function checks performed.

[nixos-discourse]

This pull request has been mentioned on Nix community. There might be relevant details there:

https://discourse.nixos.org/t/prs-already-reviewed/2617/12