picard-tools: 2.22.0 -> 2.22.2

[r-ryantm]

Semi-automatic update generated by nixpkgs-update tools. This update was made based on information from https://github.com/broadinstitute/picard/releases.

meta.description for picard-tools is: "Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF"

meta.homepage for picard-tools is: "https://broadinstitute.github.io/picard/"

Updates performed:

• Version update

Release on GitHub

Compare changes on GitHub

Checks done (click to expand)

• built on NixOS

• The tests defined in passthru.tests, if any, passed

• 0 of 0 passed binary check by having a zero exit code.

• 0 of 0 passed binary check by having the new version present in output.

• found 2.22.2 with grep in /nix/store/nfppmwjh213ffivvsmd6pljkl0b207w3-picard-tools-2.22.2

• directory tree listing: https://gist.github.com/9501fdce2bb92fb724d4afac2119a468

• du listing: https://gist.github.com/3bd64b192ccfa38c770838473170242d

Rebuild report (if merged into master) (click to expand)

4 total rebuild path(s)

1 package rebuild(s)

1 x86_64-linux rebuild(s)
1 i686-linux rebuild(s)
1 x86_64-darwin rebuild(s)
1 aarch64-linux rebuild(s)

First fifty rebuilds by attrpath
picard-tools

Instructions to test this update (click to expand)

Either download from Cachix:

nix-store -r /nix/store/nfppmwjh213ffivvsmd6pljkl0b207w3-picard-tools-2.22.2 \
  --option binary-caches 'https://cache.nixos.org/ https://r-ryantm.cachix.org/' \
  --option trusted-public-keys '
  r-ryantm.cachix.org-1:gkUbLkouDAyvBdpBX0JOdIiD2/DP1ldF3Z3Y6Gqcc4c=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '

(r-ryantm's Cachix cache is only trusted for this store-path realization.)
For the Cachix download to work, your user must be in the trusted-users list or you can use sudo since root is effectively trusted.

Or, build yourself:

nix-build -A picard-tools https://github.com/r-ryantm/nixpkgs/archive/92c888135829a1a30b0ea50bcfad69f6490df827.tar.gz

After you've downloaded or built it, look at the files and if there are any, run the binaries:

ls -la /nix/store/nfppmwjh213ffivvsmd6pljkl0b207w3-picard-tools-2.22.2
ls -la /nix/store/nfppmwjh213ffivvsmd6pljkl0b207w3-picard-tools-2.22.2/bin

cc @jbedo for testing.

[jbedo]

LGTM.