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  1. Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2

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  2. Nextflow workflow for virus detection, integration site mapping and splice-variant detection.

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  3. Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.

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  4. CaTCH Public

    Analysis code for CaTCH barcoding experiments.

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  5. Repository of Makefiles for Docker containers

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  6. Nextflow workflow for circos visualizations of variant data.

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  • CaTCH Public

    Analysis code for CaTCH barcoding experiments.

    Python 2 MIT 0 0 0 Updated Jul 27, 2022
  • virus-detection-nf Public

    Nextflow workflow for virus detection, integration site mapping and splice-variant detection.

    Python 4 MIT 1 0 0 Updated Jan 3, 2021
  • Containers Public

    Repository of Makefiles for Docker containers

    Dockerfile 1 AGPL-3.0 0 0 0 Updated Jun 17, 2020
  • snv-calling-nf Public

    Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2

    Nextflow 5 MIT 1 0 0 Updated Nov 22, 2018
  • sv-calling-nf Public

    Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.

    Nextflow 2 MIT 0 0 0 Updated May 22, 2018
  • wgs-alignment-nf Public

    Nextflow workflow for BWA alignment of WGS

    0 MIT 0 0 0 Updated May 17, 2018
  • battenberg-nf Public

    Nextflow workflow for Battenberg to detect subclonality and copy number in matched NGS data

    Nextflow 0 MIT 0 0 0 Updated May 17, 2018
  • variant-circos-nf Public

    Nextflow workflow for circos visualizations of variant data.

    Nextflow 0 AGPL-3.0 0 0 0 Updated May 16, 2018

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