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snv-calling-nf Public
Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2
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virus-detection-nf Public
Nextflow workflow for virus detection, integration site mapping and splice-variant detection.
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sv-calling-nf Public
Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.
Nextflow 2
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Repositories
- virus-detection-nf Public
Nextflow workflow for virus detection, integration site mapping and splice-variant detection.
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- snv-calling-nf Public
Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2
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- battenberg-nf Public
Nextflow workflow for Battenberg to detect subclonality and copy number in matched NGS data
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