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@ObenaufLab

ObenaufLab

Repositories

  • virus-detection-nf

    Nextflow workflow for virus detection, integration site mapping and splice-variant detection.

    Python MIT 1 3 0 0 Updated Jan 3, 2021
  • CaTCH

    Analysis code for CaTCH barcoding experiments.

    Python MIT 0 0 0 0 Updated Dec 9, 2020
  • Containers

    Repository of Makefiles for Docker containers

    Dockerfile AGPL-3.0 0 1 0 0 Updated Jun 17, 2020
  • snv-calling-nf

    Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2

    Nextflow MIT 1 5 0 0 Updated Nov 22, 2018
  • sv-calling-nf

    Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.

    Nextflow MIT 0 1 0 0 Updated May 22, 2018
  • wgs-alignment-nf

    Nextflow workflow for BWA alignment of WGS

    MIT 0 0 0 0 Updated May 17, 2018
  • battenberg-nf

    Nextflow workflow for Battenberg to detect subclonality and copy number in matched NGS data

    Nextflow MIT 0 0 0 0 Updated May 17, 2018
  • variant-circos-nf

    Nextflow workflow for circos visualizations of variant data.

    Nextflow AGPL-3.0 0 0 0 0 Updated May 16, 2018

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