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    8 repositories

    • CaTCH

      Public
      Analysis code for CaTCH barcoding experiments.
      Python
      •
      MIT License
      •0•3•0•0•Updated Jul 27, 2022Jul 27, 2022

    • virus-detection-nf

      Public
      Nextflow workflow for virus detection, integration site mapping and splice-variant detection.
      Python
      •
      MIT License
      •1•4•0•0•Updated Jan 3, 2021Jan 3, 2021

    • Containers

      Public
      Repository of Makefiles for Docker containers
      Dockerfile
      •
      GNU Affero General Public License v3.0
      •0•1•0•0•Updated Jun 17, 2020Jun 17, 2020

    • snv-calling-nf

      Public
      Nextflow workflow for SNV calling using GATK4 / MuTect2, CaVEMan / Pindel and Strelka2
      Nextflow
      •
      MIT License
      •1•5•0•0•Updated Nov 22, 2018Nov 22, 2018

    • sv-calling-nf

      Public
      Nextflow workflow for SV calling using delly2, lumpy, manta and BRASS.
      Nextflow
      •
      MIT License
      •0•2•0•0•Updated May 22, 2018May 22, 2018

    • wgs-alignment-nf

      Public
      Nextflow workflow for BWA alignment of WGS
      MIT License
      •0•0•0•0•Updated May 17, 2018May 17, 2018

    • battenberg-nf

      Public
      Nextflow workflow for Battenberg to detect subclonality and copy number in matched NGS data
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated May 17, 2018May 17, 2018

    • variant-circos-nf

      Public
      Nextflow workflow for circos visualizations of variant data.
      Nextflow
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated May 16, 2018May 16, 2018