Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update list of sequencers for poly-g trimming #508

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

semenko
Copy link

@semenko semenko commented Jul 14, 2023

This PR updates and expands the list of serial numbers of Illumina 2-color SBS sequencers for poly-g trimming.

These values come from: https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003880

This expands the previous 2-color list by adding:

  • NovaSeq 1000/2000 (@VL @VH)
  • NovaSeq X Plus (@LH)

This also broadens the NovaSeq 6000 serial from (@A0 --> @A) per Illumina's doc.

(I do not see @NDX documented by illumina, but this might be their NextSeq 550Dx FDA-regulated sequencer.)

Expanded parsing of Illumina 2-color SBS definitions for poly-g trimming.

These values are via: https://knowledge.illumina.com/instrumentation/general/instrumentation-general-reference_material-list/000003880

This expands the previous 2-color list by adding:
Novaseq 1000/2000 (@vl @vh)
Novaseq X Plus (@lh)

This changes the Novaseq 6000 header from (@a0 to @A) per Illumina's doc.

(I do not see @ndx documented by illumina, but this might be their NextSeq 550Dx FDA-regulated sequencer.)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant