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Sources of Data
The Master List - the Google Sheet of all OSM Compounds (Can filter Series 4).
OSIRIS DataWarrior (general purpose open-source chemoinformatics software).
Sister sheet that explains column headings (i.e. assays used).
Visualisation of OSM molecules on Cheminfo. The data may be visualized with
Vortex. The Series 4 SDF can be generated on Cheminfo - here is a downloadable version from May 2016.
The principal Labtrove ELN
Ed Tse's Labarchives ELN Short URL: https://tinyurl.com/OSM-Ed-Tse
Jasper Tyler's Lab Notebook
Marat Korsik's Lab Notebook
David Smith's Lab Notebook
Joshua Maxwell's Lab Notebook
Chase Smith's Labarchives ELN
Mark Coster's group (Griffith Uni) ELN
Old document from CRO describing synthetic chemistry of some members of series
2014 (Jun) GSK Single shot potencies and July analysis of the actives (all data on Wiki and in Master List, checked by MHT)
2014 Syngene Potency Received (Nov) and Sent (Sept) (all data on Wiki and in Master List, checked by MHT)
2014 hERG data (figure in terms of IC50 or pIC50) file mirror
2015 (Nov) Syngene Potency (all data on Wiki and in Master List, checked by MHT)
2016 (June) Syngene Potency (sent May 2016) (all data on Wiki and in Master List, checked by MHT)
Metabolic/Physchem Data from Monash
Dundee Feb 2018 - ELN link
Pfizer Jan 2018
Dundee Oct 2017
Dundee July 2017
Also Dundee Jan 2017 re-evaluation of Frontrunners
Syngene-Kirk Correlation Nov 2016
Syngene Nov 2016 Labtrove
Ed Tse's PhD Thesis - Open Source Malaria: Potent Triazolopyrazine-Based Antiplasmodium Agents that Probe an Important Mechanism of Action
First paper based on this series is being written up here. Relevant 2016 review from MMV. 2017 New developments in anti-malarial target candidate and product profiles.
There is also a place on the separate Talks-Meetings-Publicity wiki for other items such as talks given, meetings and articles about OSM.
The To Do List
How to involve yourself in OSM is described in the Landing Page under "Join the Team".
Initial briefing document on the series written for MMV and a PDF summary of pharmacokinetics and efficacy; largely folded into the page below. (A minor error in the briefing document referring to the amides has been clarified.)
PDF of the Compounds Originally Inherited from MMV including structures and potencies (http://malaria.ourexperiment.org/osdd_malaria_shared/8106/MMV_triazolopyrazine_data.html older version of this file])
Old Summary of Data on Amides in the Series
ELN post containing many of the raw Chemdraw and picture files for this wiki page - if you generate new pictures, add to the ELN page. This resource needs porting to Github.
Project Reports: Devon Scott and Eduvie Omene, University of Edinburgh, Tom MacDonald, The University of Sydney.
Most recent online meeting (May 2016) relevant to this series. Recording.
Aims, Concerns and Current Interest in Series 4
Modification of Core Triazolopyrazine
Modification of Pyrazine Substitution Pattern
Modification of the Triazole Substitution
Pyrazine Side Chain Modifications - Ethers
Pyrazine Side Chain Modifications - Amides
Pyrazine Side Chain Modifications - Reversed Amides
Pyrazine Side Chain Modifications - Others
Biological Data Currently not Incorporated into the Main Wiki Sections
Mechanism of Action: Possible PfATP4 Activity Deduced from Parasite Ion Regulation Assays
Synthesis of the Ether-Linked Series
Synthesis of the Amide-Linked Series
Synthesis of the Reverse Amide- Linked Series
Synthesis of Benzylic Functionalised Ether-Linked Series
Alternative Routes to the Triazolopyrazine Core
Triazolopyrazine telesubstitution
Chirality/Stereogenic Centres in This Series
Other Sources of Compounds Relevant to this Series
Desirable Compounds Not Yet Synthesised