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update nbs, tutorial data and html versions #78
Commits on Mar 8, 2024
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Commits on Mar 26, 2024
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homepage nb 2: refresh output for Jenkins
``` _ PAVICS-landing-fix_nbs_jupyter_alpha_refresh_output/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb::Cell 0 _ Notebook cell execution failed Cell 0: Cell outputs differ Input: import warnings import xarray as xr from IPython.display import display # Fancy representation of xarray objects from siphon.catalog import TDSCatalog warnings.simplefilter("ignore") url = "https://pavics.ouranos.ca/twitcher/ows/proxy/thredds/catalog/datasets/simulations/bias_adjusted/cmip5/ouranos/cb-oura-1.0/catalog.xml" # TEST_USE_PROD_DATA # Create Catalog cat = TDSCatalog(url) # DAP link for this demo ds_url = cat.datasets[0].access_urls["OPENDAP"] # xarray.Dataset ds = xr.open_dataset(ds_url, chunks=dict(time=256 * 2, lon=32, lat=32)) display(ds) a = ds.tasmin.isel(time=0).plot(figsize=(10, 4)) Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...id: NCC' == '<xarray.Data...id: NCC' Skipping 957 identical leading characters in diff, use -v to show - driving_experiment: historical,rcp85 + driving_model: NorESM1-M ... ... frequency: day modeling_realm: atmos target_dataset: CANADA : ANUSPLIN interpolated Canada daily 3... target_dataset_references: CANADA : https://doi.org/10.1175/2011BAMS3132... driving_institution: Norwegian Climate Centre driving_institute_id: NCC _ PAVICS-landing-fix_nbs_jupyter_alpha_refresh_output/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb::Cell 1 _ Notebook cell execution failed Cell 1: Cell outputs differ Input: from clisops.core import subset lon = [-75.4, -85, -65.5] # Longitude lat = [46.67, 41, 55.3] # Latitude ds_gridpoint = subset.subset_gridpoint(ds, lon=lon, lat=lat) display(ds_gridpoint) # Plot first year of tasmax data a = ds_gridpoint.tasmax.isel(time=slice(0, 365)).plot.line(x="time", figsize=(10, 4)) Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...id: NCC' == '<xarray.Data...id: NCC' Skipping 892 identical leading characters in diff, use -v to show - driving_experiment: historical,rcp85 + driving_model: NorESM1-M ... ... frequency: day modeling_realm: atmos target_dataset: CANADA : ANUSPLIN interpolated Canada daily 3... target_dataset_references: CANADA : https://doi.org/10.1175/2011BAMS3132... driving_institution: Norwegian Climate Centre driving_institute_id: NCC _ PAVICS-landing-fix_nbs_jupyter_alpha_refresh_output/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb::Cell 3 _ Notebook cell execution failed Cell 3: Cell outputs differ Input: # Specify the longitude and latitude boundaries lon_bnds = [-80.5, -60.2] lat_bnds = [44, 55] ds1 = subset.subset_bbox(ds, lon_bnds=lon_bnds, lat_bnds=lat_bnds) display(ds1) # Plot a map of first timestep a = ds1.tasmax.isel(time=0).plot() Traceback: mismatch 'text/plain' assert reference_output == test_output failed: '<xarray.Data...id: NCC' == '<xarray.Data...id: NCC' Skipping 955 identical leading characters in diff, use -v to show - driving_experiment: historical,rcp85 + driving_model: NorESM1-M ... ... frequency: day modeling_realm: atmos target_dataset: CANADA : ANUSPLIN interpolated Canada daily 3... target_dataset_references: CANADA : https://doi.org/10.1175/2011BAMS3132... driving_institution: Norwegian Climate Centre driving_institute_id: NCC ```
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homepage nb3: refresh output for Jenkins
``` _ PAVICS-landing-fix_nbs_jupyter_alpha_refresh_output/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb::Cell 2 _ Notebook cell execution failed Cell 2: Cell outputs differ Input: import xclim # Access some station data url = "https://pavics.ouranos.ca/twitcher/ows/proxy/thredds/dodsC/datasets/station_obs/ECCC_AHCCD_gen3_temperature.ncml" ds_stat = xr.open_dataset(url, chunks=dict(station=1)) istat = 115 # Compare use of differernt percent tolerance levels (tolerance == 0.1) plt.figure(figsize=(15, 10)) color = ["blue", "green", "orange"] for i, tol in enumerate([0.25, 0.1, 0.05]): plt.subplot(3, 1, i + 1) with xclim.set_options( check_missing="pct", missing_options={"pct": {"tolerance": tol}} ): # compute yearly max tasmax tx_mean = xclim.atmos.tx_mean( tasmax=ds_stat.isel(station=istat).tasmax, freq="YS" ) tx_mean.plot( marker="o", color=color[i], label=f"{len(tx_mean.dropna('time').values)} \ valid years w/ <={tol*100}% missing data", ) plt.title("") plt.xlabel("") if i == 0: name = str(ds_stat.isel(station=istat).station_name.values) plt.title(f"{name.capitalize().replace('_',' ')} Station") elif i == 2: plt.xlabel("time") plt.legend(loc="lower right") Traceback: Unexpected output fields from running code: {'stderr'} ```
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Commits on May 1, 2024
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homepage nb3: update output for Jenkins
Attempt to fix the following error: ``` _ PAVICS-landing-fix_nbs_jupyter_alpha_refresh_output/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb::Cell 2 _ Notebook cell execution failed Cell 2: Cell outputs differ Input: import xclim # Access some station data url = "https://pavics.ouranos.ca/twitcher/ows/proxy/thredds/dodsC/datasets/station_obs/ECCC_AHCCD_gen3_temperature.ncml" ds_stat = xr.open_dataset(url, chunks=dict(station=1)) istat = 115 # Compare use of differernt percent tolerance levels (tolerance == 0.1) plt.figure(figsize=(15, 10)) color = ["blue", "green", "orange"] for i, tol in enumerate([0.25, 0.1, 0.05]): plt.subplot(3, 1, i + 1) with xclim.set_options( check_missing="pct", missing_options={"pct": {"tolerance": tol}} ): # compute yearly max tasmax tx_mean = xclim.atmos.tx_mean( tasmax=ds_stat.isel(station=istat).tasmax, freq="YS" ) tx_mean.plot( marker="o", color=color[i], label=f"{len(tx_mean.dropna('time').values)} \ valid years w/ <={tol*100}% missing data", ) plt.title("") plt.xlabel("") if i == 0: name = str(ds_stat.isel(station=istat).station_name.values) plt.title(f"{name.capitalize().replace('_',' ')} Station") elif i == 2: plt.xlabel("time") plt.legend(loc="lower right") Traceback: Missing output fields from running code: {'stderr'} ```
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Commits on May 3, 2024
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Merge remote-tracking branch 'origin/fix_nbs_jupyter_alpha' into fix_…
…nbs_jupyter_alpha_refresh_output
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Commits on May 8, 2024
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Merge branch 'master' of https://github.com/Ouranosinc/PAVICS-landing …
…into fix_nbs_jupyter_alpha � Conflicts: � content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb � content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb � content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.html � content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb � content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb � content/notebooks/climate_indicators/output.zip � src/assets/notebooks/PAVICStutorial_ClimateDataAnalysis-4Ensembles.html
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[pre-commit.ci] auto fixes from pre-commit.com hooks
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