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Release 0.0.0a12 #83

Merged
merged 32 commits into from
Mar 20, 2019
Merged

Release 0.0.0a12 #83

merged 32 commits into from
Mar 20, 2019

Commits on Feb 21, 2019

  1. Update doc for now allowed constant species in condition table (#65)

    @dweindl
    dweindl committed Feb 21, 2019
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  2. Merge pull request #75 from ICB-DCM/feature_65_constspec 

    Update doc for now allowed constant species in condition table (#65)
    @dweindl
    dweindl committed Feb 21, 2019
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Commits on Mar 4, 2019

  1. Remove duplicate function, remove extra arguments (#78)

    @dweindl
    dweindl committed Mar 4, 2019
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Commits on Mar 8, 2019

  1. Minor fixups (#79) 

    * Various cleanup

* Make warning regarding unmapped parameters optional (can get extremely long and unreadable)

* Make warning regarding unmapped parameters optional (can get extremely long and unreadable)

* Update petab/core.py

Co-Authored-By: dweindl <dweindl@users.noreply.github.com>
    @dweindl
    dweindl committed Mar 8, 2019
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Commits on Mar 10, 2019

  1. Fix unused no-warning argument

    @dweindl
    dweindl committed Mar 10, 2019
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Commits on Mar 19, 2019

  1. add costs

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  2. fix flake8

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  3. improve doc of get_costs

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  4. update version 0.0.0a12

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  5. all cost -> noiseDistribution

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  6. read noiseDistributions from measurement file; check validity in lint

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  7. correction of parameter names in documentation

    @JanHasenauer
    JanHasenauer committed Mar 19, 2019
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  8. Update documentation_data_format.md

    @JanHasenauer
    JanHasenauer committed Mar 19, 2019
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  9. Update documentation_data_format.md

    @JanHasenauer
    JanHasenauer committed Mar 19, 2019
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  10. Update documentation_data_format.md

    @JanHasenauer
    JanHasenauer committed Mar 19, 2019
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  11. Update documentation_data_format.md

    @JanHasenauer
    JanHasenauer committed Mar 19, 2019
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  12. various fixes

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  13. update documentation for noise model

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  14. make observableTransformation col optional

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  15. fix flake8

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  16. print -> logger.warn

    @yannikschaelte
    yannikschaelte committed Mar 19, 2019
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  17. Fix parameter check constant (#82) 

    * Remove .DS_Store

* More informative error message

* Fix linter error for constant parameters

* Don't abuse parameter const-ness

* Adapt tests

* Update doc
    @dweindl
    dweindl committed Mar 19, 2019
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  18. Bump version number (0.0.0a12)

    @dweindl
    dweindl committed Mar 19, 2019
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  19. Merge branch 'master' into develop

    @dweindl
    dweindl committed Mar 19, 2019
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  20. Update README.md

    @dweindl
    dweindl committed Mar 19, 2019
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  21. Merge branch 'develop' of github.com:ICB-DCM/PEtab into develop

    @dweindl
    dweindl committed Mar 19, 2019
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Commits on Mar 20, 2019

  1. getFormula uses incorrect processing. Replaced. (#87) 

    * getFormula uses incorrect processing. Replaced.
    @paulstapor
    paulstapor committed Mar 20, 2019
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  2. noise distr: lint also missing values, add test

    @yannikschaelte
    yannikschaelte committed Mar 20, 2019
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  3. Merge branch 'develop' into feature_obs_scale

    @yannikschaelte
    yannikschaelte committed Mar 20, 2019
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  4. noise distr: group only by observable, since before checked that then… 

    … it is 1-1 to trafo and distr
    @yannikschaelte
    yannikschaelte committed Mar 20, 2019
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  5. Merge pull request #80 from ICB-DCM/feature_obs_scale 

    add costs
    @yannikschaelte
    yannikschaelte committed Mar 20, 2019
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  6. Use entrypoints to install petablint as a command (#85) 

    * Use entrypoints to install petablint

* Add ability to specify directory from command line

Also a couple linting things :)
    @cthoyt @yannikschaelte
    cthoyt authored and yannikschaelte committed Mar 20, 2019
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