@PMBio

Probabilistic Models in Biology

scLVM

scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources of variation.

Updated Sep 7, 2016

HTML 3 3

scMT-seq

Updated Sep 2, 2016

limix

Updated Jul 7, 2016

Python 1 0

GNetLMM

Updated Jun 30, 2016

Jupyter Notebook 3 5

limix-tutorials

Limix tutorials and demos

Updated Jun 27, 2016

Jupyter Notebook 0 0

scLVM-tutorials

Updated Jun 21, 2016

scLVM-correspondence

NBT correspondence on scLVM

Updated May 24, 2016

Python 3 1

mtSet

mtSet is an implementation of efficient set test algorithms for joint analysis across multiple traits. mtSet can account for confounding factors such as relatedness and can be used for analysis of single traits.

Updated Nov 9, 2015

HTML 7 3

cyclone

cyclone

Updated Jul 21, 2015

Python 11 4

warpedLMM

Updated Apr 2, 2015

Python 0 0

sqtl

Tools and models for QTL mapping using allele count data from selection experiments on large segregant populations.

Updated Jan 18, 2015

Python 0 0

pygp_kronsum

Updated Jun 6, 2014

envGPLVM

PANAMA and LIMMI models

Updated Feb 18, 2014

Python 1 1

gwatools

gwatools

Updated Oct 27, 2013

Python 3 0

gptwosample

GPtwosample

Updated Jul 3, 2013

peer

forked from mz2/peer

A factor analysis package

Updated May 8, 2012

Python 24 7

pygp

A Gaussian process toolbox in python

Updated Apr 20, 2012

sparseFA

Efficient sparse factor analysis models using approximate infernece

Updated Nov 8, 2011