Skip to content
@PNNL-Comp-Mass-Spec

Computational Mass Spectrometry @ Pacific Northwest National Laboratory

Popular repositories Loading

  1. Thermo-Raw-File-Reader Thermo-Raw-File-Reader Public

    .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

    C# 38 12

  2. Informed-Proteomics Informed-Proteomics Public

    Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

    C# 29 9

  3. LIQUID LIQUID Public

    Software tool for identifying lipids in LC-MS/MS-based lipidomics data

    C# 19 2

  4. DeconTools DeconTools Public

    Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

    C# 17 4

  5. MASIC MASIC Public

    MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics incl…

    C# 15 4

  6. DB-Schema-Export-Tool DB-Schema-Export-Tool Public

    Exports SQL Server and Postgres database objects as schema files. Exported objects include tables, views, stored procedures, and functions, plus also database properties including database roles an…

    C# 12 8

Repositories

11 results for all repositories written in R sorted by last updated
Showing 10 of 11 repositories
  • PNNL.DIA.utils Public

    **WORK IN PROGRESS** misc. functions for DIA proteomics data analysis and parsing to MSnSet objects

    PNNL-Comp-Mass-Spec/PNNL.DIA.utils’s past year of commit activity
    R 0 1 0 0 Updated Oct 22, 2024
  • PNNL.DMS.utils Public

    Tools to interface with PNNL's DMS in R

    PNNL-Comp-Mass-Spec/PNNL.DMS.utils’s past year of commit activity
    R 1 0 4 0 Updated Aug 21, 2024
  • MSnSet.utils Public Forked from vladpetyuk/vp.misc

    custom wrappers of frequently used R code

    PNNL-Comp-Mass-Spec/MSnSet.utils’s past year of commit activity
    R 5 8 2 0 Updated Aug 21, 2024
  • TopPICR Public

    R package for processing results from TopPIC, including resolving ambiguity in proteoform identification

    PNNL-Comp-Mass-Spec/TopPICR’s past year of commit activity
    R 4 GPL-3.0 2 0 0 Updated Apr 2, 2024
  • Rodin Public

    R package used by Lipid Mini-On to create ontology bins and perform lipid enrichment analysis.

    PNNL-Comp-Mass-Spec/Rodin’s past year of commit activity
    R 1 BSD-2-Clause 1 0 0 Updated Jan 24, 2024
  • PNNL-Comp-Mass-Spec/PlexedPiper’s past year of commit activity
    R 2 7 0 1 Updated Jan 5, 2024
  • MSnID Public Forked from vladpetyuk/MSnID

    utilities for handling MS/MS proteomic identifications

    PNNL-Comp-Mass-Spec/MSnID’s past year of commit activity
    R 2 9 2 0 Updated Aug 1, 2023
  • PlexedPiperTestData Public

    Example of processed TMT data. MoTrPAC pilot study.

    PNNL-Comp-Mass-Spec/PlexedPiperTestData’s past year of commit activity
    R 0 0 0 2 Updated Apr 7, 2022
  • PNNL-Comp-Mass-Spec/PlexedPiper_ShinyApp’s past year of commit activity
    R 0 2 0 0 Updated Oct 2, 2020
  • MSCC Public

    Multidimensional Stoichiometric Compound Classification

    PNNL-Comp-Mass-Spec/MSCC’s past year of commit activity
    R 2 BSD-2-Clause 2 0 0 Updated Apr 1, 2019

Top languages

Loading…

Most used topics

Loading…