To install this package:
R> library(devtools)
R> biocGet("DESeq")
R> biocGet("EnsDb.Hsapiens.v79")
R> install_github("priceLab/rnaSeqNormalizer")
We will extend and enhance this package to accomodate a growing number of the formats in which RNA-seq data is avaialble.
At present (7 nov 2019) this package provides three normalization algorithms for RNA-seq counts in a data.frame whose first column is ensembl_id, and all subsequent columnns are read counts.
Details and examples are provided in the vignettes.