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rijobro
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@rijobro rijobro commented Feb 23, 2021

2D segmentation with decathlon brain tumour dataset. Do inverse transformations of single images, and of batches of data.

@wyli @tvercaut Can you check the bottom cell -- does the test time augmentation API look roughly how you expect?

tt_aug = TestTimeAugmentation(
    val_transforms,
    batch_size=5,
    num_workers=0,
    inferrer_fn=partial(infer_seg, model=model),  # fn to infer segmentation
    device=device
)
mode_tta, mean_tta, std_tta, vvc_tta = tt_aug(file, num_examples=10)

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wyli commented Feb 23, 2021

thanks, it looks really nice! I also got a feature request for multi-gpu parallel inference for TTA and ensembling. probably out of this scope but any rough idea here? cc @Nic-Ma

@rijobro rijobro requested review from ericspod and wyli April 7, 2021 10:11
@rijobro rijobro merged commit 165f3db into Project-MONAI:master Apr 7, 2021
@rijobro rijobro deleted the inverse branch April 7, 2021 11:38
@wyli
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wyli commented Apr 7, 2021

just need to update the first line to use monai-weekly, then it works nicely with colab

@rijobro rijobro mentioned this pull request Apr 7, 2021
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boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
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3 participants