Collected scripts for Pymol
Python C HTML C++ Shell Tcl Other
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examples Merge branch 'master' of https://github.com/jaredsampson/Pymol-script… Jun 8, 2012
files_for_examples Added pymol icon Feb 23, 2012
modules Improved lisica plugin - v1.0.1 Feb 24, 2016
plugins don't run Tk mainloop Jun 29, 2016
.gitignore Ignore backup files Dec 7, 2015
Draw_Protein_Dimensions.py add license and copyright notice May 11, 2016
README.md Update README.md Sep 15, 2015
aaindex.py Python3 support Dec 7, 2015
anglebetweenhelices.py restore some Python 2.5 compatibility Apr 6, 2016
b2transparency.py restore some Python 2.5 compatibility Apr 6, 2016
bbPlane.py bbPlane: make CGO recolorable Aug 12, 2016
ccp4_contact.py Autopep8: W Jul 4, 2014
ccp4_ncont.py Python3 support Dec 7, 2015
ccp4_pisa.py Python3 support Dec 7, 2015
center_of_mass.py Python3 support Dec 7, 2015
centroid.py Python3 support Dec 7, 2015
cgo_arrow.py restore some Python 2.5 compatibility Apr 6, 2016
cgo_grid.py Python3 support Dec 7, 2015
color_by_conservation.py Python3 support Dec 7, 2015
colorblindfriendly.py Python3 support Dec 7, 2015
colorbydisplacement.py Python3 support Dec 7, 2015
colorbyrmsd.py restore some Python 2.5 compatibility Apr 6, 2016
cubes.py Python3 support Dec 7, 2015
cyspka.py Python3 support Dec 7, 2015
displacementmap.py Python3 support Dec 7, 2015
distancetoatom.py Python3 support Dec 7, 2015
draw_rotation_axis.py Python3 support Dec 7, 2015
drawgridbox.py add drawgridbox.py May 25, 2016
dssr_block.py dssr_block: new "block_color" argument Apr 7, 2016
dynamic_mesh.py Python3 support Dec 7, 2015
elbow_angle.py Python3 support Dec 7, 2015
ex.py Python3 support Dec 7, 2015
extra_fit.py restore some Python 2.5 compatibility Apr 6, 2016
findSurfaceResidues.py Python3 support Dec 7, 2015
findseq.py restore some Python 2.5 compatibility Apr 6, 2016
flatten_obj.py restore some Python 2.5 compatibility Apr 6, 2016
focal_blur.py Python3 support Dec 7, 2015
format_bonds.py Python3 support Dec 7, 2015
forster_distance_calculator.py Python3 support Dec 7, 2015
frame_slider.py Python 3 support for isoslider.py and frame_slider.py Dec 9, 2015
get_colors.py Python3 support Dec 7, 2015
get_raw_distances.py fix print statements (py3k refactoring regression) May 6, 2016
grepset.py restore some Python 2.5 compatibility Apr 6, 2016
gridbox.py fix error of indent Nov 10, 2014
hbplus.py Python3 support Dec 7, 2015
inertia_tensor.py Python3 support Dec 7, 2015
isoslider.py Python 3 support for isoslider.py and frame_slider.py Dec 9, 2015
load_img_stack.py load_img_stack Jan 27, 2016
modevectors.py Python3 support Dec 7, 2015
movie_color_fade.py Python3 support Dec 7, 2015
movie_fade.py Autopep8: E3 Blank lines Jul 4, 2014
nmr_cnstr.py Python3 support Dec 7, 2015
perp_maker.py Python3 support Dec 7, 2015
plot_noe.py Python3 support Dec 7, 2015
poseview.py Python3 support Dec 7, 2015
propka.py Revert "Code cleanup" Dec 9, 2015
pymol2glmol.py Python3 support Dec 7, 2015
pymolscriptrepo.py Autopep8: E2 White Spaces Jul 4, 2014
quickdisplays.py Update quickdisplays.py (#86) May 25, 2016
removealt.py Autopep8: E7 Statements Jul 4, 2014
renumber.py restore some Python 2.5 compatibility Apr 6, 2016
rotkit.py Revert "Code cleanup" Dec 9, 2015
save_mopac.py Revert "Code cleanup" Dec 9, 2015
save_pdb_with_anisou.py Revert "Code cleanup" Dec 9, 2015
save_settings.py Revert "Code cleanup" Dec 9, 2015
select_sites.py select_sites: fetch type=pdb May 23, 2016
show_bumps.py restore some Python 2.5 compatibility Apr 6, 2016
spectrum_states.py Revert "spectrum_states.py: Code cleanup" Dec 9, 2015
spectrumany.py Revert "spectrumany.py: Code cleanup" Dec 9, 2015
spectrumbar.py Revert "spectrumbar.py: Code cleanup" Dec 9, 2015
stereo_ray.py Revert "stereo_ray.py: Code cleanup" Dec 9, 2015
tmalign.py Revert "tmalign.py: Code cleanup" Dec 9, 2015
togroup.py Revert "togroup.py: Clean imports" Dec 9, 2015
tox.ini Autopep8: E1 Indentions Jul 4, 2014
transformations.py Revert "transformations.py: Correct function call arguments" Dec 9, 2015
uniprot_features.py Revert "uniprot_features.py: Code cleanup" Dec 9, 2015
viol_noes.py Revert "viol_noes.py: Clean code" Dec 9, 2015
wfmesh.py wfmesh.py: Included pep8 recommandations Dec 7, 2015

README.md

Code Health

This is the project to put all PyMOL script under Git control.

See more here: Git intro

Import script in pymol by filename of script

import colorbydisplacement

To see the functions in the script:

help(colorbydisplacement)