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Collected scripts for Pymol

branch: master
Octocat-spinner-32 examples Merge branch 'master' of https://github.com/jaredsampson/Pymol-script…
Octocat-spinner-32 files_for_examples Added pymol icon
Octocat-spinner-32 modules Added module files for pymol2glmol
Octocat-spinner-32 plugins Update dehydron.py
Octocat-spinner-32 .gitignore Ignore .py.swp
Octocat-spinner-32 README Update README
Octocat-spinner-32 aaindex.py Added aaindex.py
Octocat-spinner-32 anglebetweenhelices.py backwards compatibility fixes
Octocat-spinner-32 b2transparency.py add b2transparency.py
Octocat-spinner-32 bbPlane.py bbPlane: add normals
Octocat-spinner-32 ccp4_contact.py removed Pointer to old repository
Octocat-spinner-32 ccp4_ncont.py removed Pointer to old repository
Octocat-spinner-32 ccp4_pisa.py removed Pointer to old repository
Octocat-spinner-32 center_of_mass.py Added center_of_mass
Octocat-spinner-32 cgo_arrow.py new: cgo_arrow
Octocat-spinner-32 color_by_conservation.py fix color_by_conservation.py for newer PyMOL versions
Octocat-spinner-32 colorblindfriendly.py Updated color values to use more precise 0-255 values from J*FLY webs…
Octocat-spinner-32 colorbydisplacement.py Added description at top of scripts
Octocat-spinner-32 colorbyrmsd.py added colorbyrmsd.py
Octocat-spinner-32 com.py Added info to file
Octocat-spinner-32 cubes.py add cubes.py
Octocat-spinner-32 cyspka.py Ready for publish
Octocat-spinner-32 displacementmap.py Added description at top of scripts
Octocat-spinner-32 dynamic_mesh.py Dynamic Mesh by Takanori Nakane
Octocat-spinner-32 elbow_angle.py remove TODO message from colorblind friendly. Clean up a couple comme…
Octocat-spinner-32 ex.py Added easy example loader
Octocat-spinner-32 extra_fit.py new script: extra_fit
Octocat-spinner-32 findSurfaceResidues.py add findSurfaceResidues
Octocat-spinner-32 findseq.py Updating findSeq with Hongbo's suggested expanded one letter dictionary.
Octocat-spinner-32 forster_distance_calculator.py Added description at top of scripts
Octocat-spinner-32 get_raw_distances.py new command: select_distances
Octocat-spinner-32 grepset.py Added grepset
Octocat-spinner-32 hbplus.py hbplus.py: new HBPLUS wrapper
Octocat-spinner-32 inertia_tensor.py Update inertia_tensor.py
Octocat-spinner-32 isoslider.py add isoslider plugin
Octocat-spinner-32 modevectors.py Added modevectors
Octocat-spinner-32 movie_fade.py new: movie_fade.py
Octocat-spinner-32 nmr_cnstr.py Small change in nmr_cnstr
Octocat-spinner-32 perp_maker.py make perp_maker a function/command
Octocat-spinner-32 plot_noe.py Lots of improvements for I/O of cns tbl file and grouping of restraints.
Octocat-spinner-32 poseview.py add poseview.py, a poseview wrapper
Octocat-spinner-32 propka.py Fixed import functions
Octocat-spinner-32 pymol2glmol.py Added functionality to script
Octocat-spinner-32 pymolscriptrepo.py pymolscriptrepo module for PATH/which support
Octocat-spinner-32 removealt.py Added removealt
Octocat-spinner-32 renumber.py feedback for renumber when done
Octocat-spinner-32 rotkit.py Added rotkit examples
Octocat-spinner-32 save_mopac.py added save_mopac.py
Octocat-spinner-32 save_pdb_with_anisou.py add save_pdb_with_anisou.py
Octocat-spinner-32 save_settings.py import save_settings.py from PyMOLWiki
Octocat-spinner-32 select_sites.py Added async=0 to sites command
Octocat-spinner-32 show_bumps.py new: show_bumps.py (from PyMOLWiki)
Octocat-spinner-32 spectrum_states.py add spectrum_states.py and improve spectrumany.py
Octocat-spinner-32 spectrumany.py add spectrum_states.py and improve spectrumany.py
Octocat-spinner-32 spectrumbar.py Import from wiki
Octocat-spinner-32 stereo_ray.py stereo_ray improvements
Octocat-spinner-32 tmalign.py tmalign.py version 1.1
Octocat-spinner-32 togroup.py Avoid deletion of members from other groups
Octocat-spinner-32 transformations.py Change to "import _transformations"
Octocat-spinner-32 uniprot_features.py uniprot_auto: skip empty accession/number
Octocat-spinner-32 viol_noes.py Fixed Typo
Octocat-spinner-32 wfmesh.py pymol.opengl.gl -> OpenGL.GL
README
This is the project to put all PyMOL script under Git control.

See more here: http://www.pymolwiki.org/index.php/Git_intro

#Import script in pymol by filename of script
import colorbydisplacement

To see the functions in the script:
help(colorbydisplacement)
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