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Collected scripts for Pymol
Python C HTML C++ Shell FORTRAN Other
branch: master

Update apbsplugin.py

fix the "cannot use geometry manager pack inside..." problem
latest commit 44a3741ffe
@aloctavodia aloctavodia authored
Failed to load latest commit information.
examples Merge branch 'master' of https://github.com/jaredsampson/Pymol-script…
files_for_examples Added pymol icon
modules Added module files for pymol2glmol
plugins Update apbsplugin.py
.gitignore Ignore IDE files
README Update README
aaindex.py Autopep8: E4 Imports
anglebetweenhelices.py Autopep8: E2 White Spaces
b2transparency.py Autopep8: E3 Blank lines
bbPlane.py Autopep8: W
ccp4_contact.py Autopep8: W
ccp4_ncont.py Autopep8: W
ccp4_pisa.py Autopep8: E7 Statements
center_of_mass.py Autopep8: E2 White Spaces
cgo_arrow.py Autopep8: E3 Blank lines
cgo_grid.py renamed: cgo_grid -> cgo_grid.py
color_by_conservation.py Autopep8: E2 White Spaces
colorblindfriendly.py Autopep8: W
colorbydisplacement.py Autopep8: E7 Statements
colorbyrmsd.py Autopep8: E3 Blank lines
com.py Autopep8: E2 White Spaces
cubes.py Autopep8: E2 White Spaces
cyspka.py Autopep8: E7 Statements
displacementmap.py Autopep8: E7 Statements
distancetoatom.py Update distancetoatom.py
draw_rotation_axis.py added draw_rotation_axis.py for Pablo Guardado Calvo
dynamic_mesh.py Autopep8: E2 White Spaces
elbow_angle.py Autopep8: E7 Statements
ex.py Autopep8: E2 White Spaces
extra_fit.py Autopep8: E3 Blank lines
findSurfaceResidues.py Autopep8: E3 Blank lines
findseq.py proper search in multiple chains
focal_blur.py Imported from the pymol wiki
format_bonds.py Update format_bonds.py
forster_distance_calculator.py Autopep8: E7 Statements
frame_slider.py Cleaned up some of the comments.
get_colors.py Merge branch 'autopep8'
get_raw_distances.py Autopep8: E2 White Spaces
grepset.py Autopep8: E2 White Spaces
gridbox.py fix error of indent
hbplus.py Autopep8: E4 Imports
inertia_tensor.py Autopep8: E7 Statements
isoslider.py Autopep8: E2 White Spaces
modevectors.py Autopep8: W
movie_color_fade.py Autopep8: E7 Statements
movie_fade.py Autopep8: E3 Blank lines
nmr_cnstr.py Autopep8: E7 Statements
perp_maker.py Autopep8: E2 White Spaces
plot_noe.py Enhance noe plotting script
poseview.py Autopep8: E4 Imports
propka.py Autopep8: E7 Statements
pymol2glmol.py Autopep8: E7 Statements
pymolscriptrepo.py Autopep8: E2 White Spaces
quickdisplays.py Autopep8: E7 Statements
removealt.py Autopep8: E7 Statements
renumber.py Autopep8: E2 White Spaces
rotkit.py Autopep8: E7 Statements
save_mopac.py Autopep8: E3 Blank lines
save_pdb_with_anisou.py Autopep8: E2 White Spaces
save_settings.py Autopep8: E2 White Spaces
select_sites.py Autopep8: W
show_bumps.py Autopep8: E2 White Spaces
spectrum_states.py Autopep8: E2 White Spaces
spectrumany.py Autopep8: E2 White Spaces
spectrumbar.py Autopep8: E7 Statements
stereo_ray.py Autopep8: E2 White Spaces
tmalign.py Autopep8: E7 Statements
togroup.py Autopep8: E2 White Spaces
tox.ini Autopep8: E1 Indentions
transformations.py Autopep8: E2 White Spaces
uniprot_features.py Autopep8: E3 Blank lines
viol_noes.py Autopep8: W
wfmesh.py Autopep8: E7 Statements

README

This is the project to put all PyMOL script under Git control.

See more here: http://www.pymolwiki.org/index.php/Git_intro

#Import script in pymol by filename of script
import colorbydisplacement

To see the functions in the script:
help(colorbydisplacement)
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