/Pymol-script-repo

Collected scripts for Pymol
  1. Python 60.1%
  2. C 15.9%
  3. HTML 10.8%
  4. C++ 2.9%
  5. Shell 2.6%
  6. Tcl 1.7%
  7. Other 6.0%
Python C HTML C++ Shell Tcl Other
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@speleo3
speleo3 autodock plugin: move "set retain_order" 
Move from global plugin initialization to window creation.

Closes #70
2
Latest commit 21077e7 Jun 27, 2018
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examples Merge branch 'master' of https://github.com/jaredsampson/Pymol-script… Jun 8, 2012
files_for_examples Added pymol icon Feb 23, 2012
modules AutoDockTools: eliminate oldnumeric (#98) Jun 15, 2018
plugins autodock plugin: move "set retain_order" Jun 27, 2018
.gitignore Ignore backup files Dec 7, 2015
Draw_Protein_Dimensions.py Draw_Protein_Dimensions: fix det < 0 check Feb 5, 2018
README.md Update README.md Sep 15, 2015
aKMT_Lys_pred.py Modifications to aKMT_Lys_pred.py. There is now a selection for count… Jun 30, 2017
aaindex.py aaindex: fix Python 3 conversion regressions Jan 5, 2017
anglebetweenhelices.py restore some Python 2.5 compatibility Apr 6, 2016
b2transparency.py restore some Python 2.5 compatibility Apr 6, 2016
bbPlane.py bbPlane: make CGO recolorable Aug 12, 2016
cb_colors.py Add cb_colors.py. (#95) Oct 27, 2017
ccp4_contact.py Autopep8: W Jul 4, 2014
ccp4_ncont.py Python3 support Dec 7, 2015
ccp4_pisa.py Python3 support Dec 7, 2015
center_of_mass.py Python3 support Dec 7, 2015
centroid.py Python3 support Dec 7, 2015
cgo_arrow.py restore some Python 2.5 compatibility Apr 6, 2016
cgo_grid.py Python3 support Dec 7, 2015
color_by_conservation.py Python3 support Dec 7, 2015
colorblindfriendly.py Complete overhaul of colorblindfriendly for PyMOL 2.0. (#94) Oct 26, 2017
colorbydisplacement.py Python3 support Dec 7, 2015
colorbyrmsd.py restore some Python 2.5 compatibility Apr 6, 2016
cubes.py Python3 support Dec 7, 2015
cyspka.py cyspka: remove platform code - fixes #97 Feb 13, 2018
displacementmap.py Python3 support Dec 7, 2015
distancetoatom.py Python3 support Dec 7, 2015
draw_rotation_axis.py Python3 support Dec 7, 2015
drawgridbox.py Python 3 support Dec 5, 2017
dssr_block.py dssr_block: fix example, support quoting Nov 13, 2017
dynamic_mesh.py Python3 support Dec 7, 2015
elbow_angle.py fix __future__ import, use cmd.centerofmass May 4, 2017
ex.py Python3 support Dec 7, 2015
extra_fit.py extra_fit: report RMS for method=cealign Feb 22, 2017
findSurfaceResidues.py Python3 support Dec 7, 2015
findseq.py restore some Python 2.5 compatibility Apr 6, 2016
flatten_obj.py restore some Python 2.5 compatibility Apr 6, 2016
focal_blur.py Python3 support Dec 7, 2015
format_bonds.py Python3 support Dec 7, 2015
forster_distance_calculator.py Python3 support Dec 7, 2015
frame_slider.py Python 3 support for isoslider.py and frame_slider.py Dec 9, 2015
get_colors.py Python3 support Dec 7, 2015
get_raw_distances.py fix print statements (py3k refactoring regression) May 6, 2016
grepset.py restore some Python 2.5 compatibility Apr 6, 2016
gridbox.py fix error of indent Nov 10, 2014
hbplus.py Python3 support Dec 7, 2015
inertia_tensor.py Python3 support Dec 7, 2015
isoslider.py Python 3 support for isoslider.py and frame_slider.py Dec 9, 2015
load_img_stack.py load_img_stack Jan 27, 2016
load_nrrd.py load_nrrd Sep 29, 2016
modevectors.py Python3 support Dec 7, 2015
movie_color_fade.py Python3 support Dec 7, 2015
movie_fade.py Autopep8: E3 Blank lines Jul 4, 2014
nmr_cnstr.py Python3 support Dec 7, 2015
perp_maker.py Python3 support Dec 7, 2015
plane.py Python 3 support Dec 5, 2017
plot_noe.py Python3 support Dec 7, 2015
poseview.py Python3 support Dec 7, 2015
propka.py Revert "Code cleanup" Dec 9, 2015
pymol2glmol.py pymol2glmol PyMOL version fixes Jan 25, 2017
pymolscriptrepo.py Autopep8: E2 White Spaces Jul 4, 2014
quickdisplays.py Update quickdisplays.py (#86) May 25, 2016
removealt.py Autopep8: E7 Statements Jul 4, 2014
renumber.py restore some Python 2.5 compatibility Apr 6, 2016
rotkit.py Revert "Code cleanup" Dec 9, 2015
save_mopac.py Revert "Code cleanup" Dec 9, 2015
save_pdb_with_anisou.py Revert "Code cleanup" Dec 9, 2015
save_settings.py Revert "Code cleanup" Dec 9, 2015
select_sites.py select_sites: fetch type=pdb May 23, 2016
show_bumps.py restore some Python 2.5 compatibility Apr 6, 2016
spectrum_states.py Revert "spectrum_states.py: Code cleanup" Dec 9, 2015
spectrumany.py Revert "spectrumany.py: Code cleanup" Dec 9, 2015
spectrumbar.py Revert "spectrumbar.py: Code cleanup" Dec 9, 2015
stereo_ray.py Revert "stereo_ray.py: Code cleanup" Dec 9, 2015
tmalign.py Revert "tmalign.py: Code cleanup" Dec 9, 2015
togroup.py Revert "togroup.py: Clean imports" Dec 9, 2015
tox.ini Autopep8: E1 Indentions Jul 4, 2014
transformations.py Revert "transformations.py: Correct function call arguments" Dec 9, 2015
uniprot_features.py Revert "uniprot_features.py: Code cleanup" Dec 9, 2015
viol_noes.py Revert "viol_noes.py: Clean code" Dec 9, 2015
wfmesh.py wfmesh.py: Included pep8 recommandations Dec 7, 2015

README.md

Code Health ###This is the project to put all PyMOL script under Git control.

See more here: Git intro

###Import script in pymol by filename of script import colorbydisplacement

To see the functions in the script:

help(colorbydisplacement)