install.packages("Rcpp") fails

[ajdamico]

login as: damico
Authenticating with public key "rsa-key-20141110"
Last login: Tue Jul 26 08:02:16 2016 from zandbak.cwi.nl
[damico@scilens-ssh ~]$ ssh stones15
Last login: Tue Jul 26 08:02:21 2016 from scilens-ssh.scilens.private
[damico@stones15 ~]$ R

R version 3.1.1 (2014-07-10) -- "Sock it to Me"
Copyright (C) 2014 The R Foundation for Statistical Computing
Platform: x86_64-redhat-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

>
> install.packages("Rcpp")
Installing package into ‘/local/damico/R/x86_64-redhat-linux-gnu-library/3.1’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
CRAN mirror

  1: 0-Cloud [https]                 2: 0-Cloud
  3: Algeria [https]                 4: Algeria
  5: Argentina (La Plata)            6: Australia (Canberra)
  7: Australia (Melbourne)           8: Austria [https]
  9: Austria                        10: Belgium (Antwerp)
 11: Belgium (Ghent) [https]        12: Belgium (Ghent)
 13: Brazil (BA)                    14: Brazil (PR)
 15: Brazil (RJ)                    16: Brazil (SP 1) [https]
 17: Brazil (SP 1)                  18: Brazil (SP 2)
 19: Bulgaria                       20: Canada (BC)
 21: Canada (MB) [https]            22: Canada (MB)
 23: Canada (NS)                    24: Canada (ON)
 25: Chile [https]                  26: Chile
 27: China (Beijing 4) [https]      28: China (Beijing 4)
 29: China (Xiamen)                 30: Colombia (Cali) [https]
 31: Colombia (Cali)                32: Czech Republic
 33: Ecuador                        34: El Salvador
 35: Estonia                        36: France (Lyon 1) [https]
 37: France (Lyon 2) [https]        38: France (Lyon 2)
 39: France (Marseille)             40: France (Montpellier)
 41: France (Paris 1)               42: France (Paris 2) [https]
 43: France (Paris 2)               44: Germany (Göttingen)
 45: Germany (Münster) [https]      46: Germany (Münster)
 47: Greece                         48: Hungary
 49: Iceland [https]                50: Iceland
 51: India                          52: Indonesia (Jakarta)
 53: Iran                           54: Ireland
 55: Italy (Milano)                 56: Italy (Padua) [https]
 57: Italy (Padua)                  58: Italy (Palermo)
 59: Japan (Tokyo) [https]          60: Japan (Tokyo)
 61: Korea (Seoul 1)                62: Korea (Seoul 2)
 63: Korea (Ulsan)                  64: Lebanon
 65: Malaysia [https]               66: Malaysia
 67: Mexico (Mexico City) [https]   68: Mexico (Mexico City)
 69: Mexico (Texcoco)               70: Netherlands (Amsterdam)
 71: Netherlands (Utrecht)          72: New Zealand [https]
 73: New Zealand                    74: Norway
 75: Philippines                    76: Poland
 77: Portugal (Lisbon)              78: Russia (Moscow) [https]
 79: Russia (Moscow)                80: Serbia [https]
 81: Singapore                      82: South Africa (Cape Town)
 83: South Africa (Johannesburg)    84: Spain (A Coruña) [https]
 85: Spain (A Coruña)               86: Spain (Madrid) [https]
 87: Spain (Madrid)                 88: Sweden
 89: Switzerland [https]            90: Switzerland
 91: Taiwan (Chungli)               92: Taiwan (Taipei)
 93: Thailand                       94: Turkey (Denizli)
 95: Turkey (Mersin)                96: UK (Bristol) [https]
 97: UK (Bristol)                   98: UK (Cambridge) [https]
 99: UK (Cambridge)                100: UK (London 1)
101: UK (London 2)                 102: UK (St Andrews)
103: USA (CA 1) [https]            104: USA (CA 1)
105: USA (CA 2)                    106: USA (IA)
107: USA (IN)                      108: USA (KS) [https]
109: USA (KS)                      110: USA (MI 1) [https]
111: USA (MI 1)                    112: USA (MO)
113: USA (NC)                      114: USA (OH 1)
115: USA (OH 2)                    116: USA (OR)
117: USA (PA 1)                    118: USA (PA 2)
119: USA (TN) [https]              120: USA (TN)
121: USA (TX) [https]              122: USA (TX)
123: USA (WA) [https]              124: USA (WA)
125: Venezuela

Selection: 120
trying URL 'http://mirrors.nics.utk.edu/cran/src/contrib/Rcpp_0.12.6.tar.gz'
Content type 'application/x-gzip' length 2415707 bytes (2.3 Mb)
opened URL
==================================================
downloaded 2.3 Mb

* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include    -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches  -m64 -mtune=generic  -c Date.cpp -o Date.o
In file included from ../inst/include/RcppCommon.h:122:0,
                 from ../inst/include/Rcpp.h:27,
                 from Date.cpp:31:
../inst/include/Rcpp/exceptions.h:267:23: error: expected initializer before ‘stop’
     inline void NORET stop(const std::string& message) {
                       ^
../inst/include/Rcpp/exceptions.h:272:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1) {
                       ^
../inst/include/Rcpp/exceptions.h:277:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2) {
                       ^
../inst/include/Rcpp/exceptions.h:282:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:287:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:292:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:297:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:302:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:307:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:312:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
../inst/include/Rcpp/exceptions.h:317:23: error: expected initializer before ‘stop’
     inline void NORET stop(const char* fmt, const T1& arg1, const T2& arg2, con
                       ^
In file included from ../inst/include/Rcpp/Vector.h:56:0,
                 from ../inst/include/Rcpp.h:38,
                 from Date.cpp:31:
../inst/include/Rcpp/vector/DimNameProxy.h: In member function ‘Rcpp::internal::DimNameProxy& Rcpp::internal::DimNameProxy::assign(SEXP)’:
../inst/include/Rcpp/vector/DimNameProxy.h:43:121: error: too many arguments to function ‘void Rcpp::stop(const string&)’
 is '%d' while length of names is '%d'", INTEGER(dims)[dim_], Rf_length(other));
                                                                              ^
In file included from ../inst/include/RcppCommon.h:70:0,
                 from ../inst/include/Rcpp.h:27,
                 from Date.cpp:31:
../inst/include/Rcpp/utils/tinyformat.h:127:10: note: declared here
     void stop(const std::string& message);
          ^
In file included from ../inst/include/Rcpp.h:47:0,
                 from Date.cpp:31:
../inst/include/Rcpp/Function.h: In constructor ‘Rcpp::Function_Impl<StoragePolicy>::Function_Impl(const string&, const string&)’:
../inst/include/Rcpp/Function.h:72:63: error: too many arguments to function ‘void Rcpp::stop(const string&)’
                 stop("there is no namespace called \"%s\"", ns);
                                                               ^
In file included from ../inst/include/RcppCommon.h:70:0,
                 from ../inst/include/Rcpp.h:27,
                 from Date.cpp:31:
../inst/include/Rcpp/utils/tinyformat.h:127:10: note: declared here
     void stop(const std::string& message);
          ^
make: *** [Date.o] Error 1
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/local/damico/R/x86_64-redhat-linux-gnu-library/3.1/Rcpp’

The downloaded source packages are in
        ‘/tmp/RtmpuMmkYx/downloaded_packages’
Warning message:
In install.packages("Rcpp") :
  installation of package ‘Rcpp’ had non-zero exit status
> sessionInfo()
R version 3.1.1 (2014-07-10)
Platform: x86_64-redhat-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] tools_3.1.1
>

machine version info

uname -a
Linux stones15.scilens.private 3.12.10-300.fc20.x86_64 #1 SMP Thu Feb 6 22:11:48 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux

gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-isl=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20131212/obj-x86_64-redhat-linux/cloog-install --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.2 20131212 (Red Hat 4.8.2-7) (GCC) 

[eddelbuettel]

See #512 and #516 as well as this SO question from yesterday.

Combination of your R too old and us missing that in 0.12.6 -- so use 0.12.6.1 or upgrade R.

[ajdamico]

thanks!

[eddelbuettel]

No problem. Sorry about the bug. I also emailed to rcpp-devel but R-Forge seems to once again not deliver emails right now.