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Dear Eddelbuettel,
I have just met a problem with RcppEigen installation and thus leading to failure of install ClusterProfiler in R studio of Centos 7.4 system on Tencent Cloud.
I was wondering if you could employ any spare time on this issue, and attached �.txt document is the error reports of whole process.
> install.packages("RcppEigen")
Installing package into ‘/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/RcppEigen_0.3.3.5.0.tar.gz'
Content type 'application/x-gzip' length 1633859 bytes (1.6 MB)
==================================================
downloaded 1.6 MB
* installing *source* package ‘RcppEigen’ ...
** package ‘RcppEigen’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -I../inst/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c RcppEigen.cpp -o RcppEigen.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -I../inst/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c RcppExports.cpp -o RcppExports.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -I../inst/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c fastLm.cpp -o fastLm.o
g++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://bugzilla.redhat.com/bugzilla> for instructions.
make: *** [fastLm.o] Error 4
ERROR: compilation failed for package ‘RcppEigen’
* removing ‘/home/rstudio/R/x86_64-redhat-linux-gnu-library/3.6/RcppEigen’
Warning in install.packages :
installation of package ‘RcppEigen’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpqUtSXk/downloaded_packages’
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