Plotting Bug fixes and new features #75
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add option for labels to be added to TransitionGroupFeature plot
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Looks good! I like the legends for the peak boundaries and the normalization of the 2D plots.
I just made a suggestion to make a method for the equalization code and place it in the dataProcessing/transformations.py file
I think it would be good to add 2D gaussian smoothing to the heatmaps. Maybe @alhigaylan has already done this in a separate branch?
Can be merged when ready.
| hist, bins = np.histogram(arr.flatten(), self.config.normalization_dict['bins'], density=True) | ||
| cdf = hist.cumsum() # cumulative distribution function | ||
| cdf = (self.config.normalization_dict['bins']-1) * cdf / cdf[-1] # normalize | ||
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| # use linear interpolation of cdf to find new pixel values | ||
| image_equalized = np.interp(arr.flatten(), bins[:-1], cdf) | ||
| arr = image_equalized.reshape(arr.shape) |
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Can you add this as a method to the dataProcessing/transformations.py file?
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I was talking with @alhigaylan and he said he did 1D gauss smoothing and not 2D maybe they can be combined once everything is merged. |
Sounds good, we can merge for now, and then integrate once they're all merged together. |
While making figures fixed the following bugs and added these features
Features
Bug fixes