Correctly remove BAM links on suppress

SamStudio8 · Jan 5, 2022 · 7a3c425 · 7a3c425
1 parent 1db3637
commit 7a3c425
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bin/control/cog-publish.sh b/bin/control/cog-publish.sh
@@ -99,9 +99,9 @@ if [ ! -f "$LINKS_OK_FLAG" ]; then
     do
         base=`basename $bam`
         set +e
-        unlink $COG_PUBLISHED_DIR/latest/alignment/$bam
+        unlink $COG_PUBLISHED_DIR/latest/alignment/$base
         ret=$?
-        unlink $COG_PUBLISHED_DIR/latest/alignment/$bam.bai
+        unlink $COG_PUBLISHED_DIR/latest/alignment/$base.bai
         set -e
 
         if [ $ret -eq 0 ]; then