scRNA processing tutorial

This repository contains the jupyter notebooks and scripts I created to teach myself the basics of scRNA processing.

1. I used STARsolo to align raw FASTQ files to the genome. That tutorial is in scRNA_fastq_processing.ipynb
2. I used scanpy to perform quality control on a dataset. That tutorial is in scRNA_quality_control.ipynb

Versions:

star 2.7.11b
python 3.12.3

All scripts run on my personal computer (Windows 10 with an 8 core CPU and 16 GB RAM).