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2 threads and 2 cpus for each FastQC process #632

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Sep 4, 2018

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@alneberg alneberg commented Sep 3, 2018

This PR improves the execution of FastQC so that it uses one thread per fastq file as described in #631.

PR checklist

  • This comment contains a description of changes (with reason)
  • Test suite passes (./scripts/test.sh -p docker -t ALL).

Tests do not pass. But I highly suspect that is due to my personal setup for some reason. Travis checks should give a final decision.

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alneberg commented Sep 4, 2018

The tests pass on travis and on rackham so should be fine. Still have some issues running it on the mac, but that is probably not related to this issue.

@maxulysse maxulysse merged commit d8af9d1 into SciLifeLab:master Sep 4, 2018
@maxulysse maxulysse mentioned this pull request Sep 7, 2018
jherrero referenced this pull request in UCL-BLIC/Sarek_v2.2.1 Apr 11, 2019
2 threads and 2 cpus for each FastQC process
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2 participants